Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATTAP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70610 1033 / 0 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT5G39040 328 / 1e-102 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G28010 288 / 1e-83 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28345 280 / 7e-81 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G27940 280 / 1e-80 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28390 278 / 4e-80 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G62150 277 / 1e-79 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT5G46540 275 / 3e-79 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28380 275 / 6e-79 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 272 / 6e-78 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 362 / 2e-115 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 359 / 1e-114 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 352 / 6e-112 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 343 / 1e-108 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.014G113000 [exp] 289 / 1e-83 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 287 / 4e-83 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 281 / 5e-81 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113200 [exp] 279 / 2e-80 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 278 / 3e-80 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036857 [exp] 966 / 0 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10006209 [exp] 949 / 0 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10022270 [exp] 725 / 0 AT1G70610 738 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10007987 [exp] 367 / 2e-117 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 361 / 3e-115 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10010012 [exp] 280 / 6e-81 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010067 [exp] 280 / 2e-80 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004571 [exp] 278 / 2e-80 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10024162 [exp] 274 / 1e-78 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 273 / 2e-78 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region CL0023 [poplar] [flax] P-loop_NTPase PF13304 [poplar] [flax] AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system
Representative CDS sequence Show only first row Show all	>Potri.010G045900.2 pacid=42797040 polypeptide=Potri.010G045900.2.p locus=Potri.010G045900 ID=Potri.010G045900.2.v4.1 annot-version=v4.1 ATGGCCGTGCTGATTTGCAGCAGCAATGTCAACTTAATAAAGCCTCGCCTTCTCTCTTCGCCTCACCACCACAAATATAAGCAACGTCGTCTAATCCGTA CCTGTAGGAACCTCGTCCGTTTAGACACCGGTACCGGATTTCAATTTTCCCTTCATAATAATAATAATAATAGAAGAAGACCACTTCCCCCAAAATCTTC ATCTTCTTCTTCATCATCATCAGTAAACGGCTATGGCAGTAACATAGAACAGTATTATGGCAGCGAGCAGCGGGTGGAGAGAGAGGAAGGTGTTGAGTTA AACAAGAGGATTCGGAGATTTATCGAGTTTCTTCCGTCAATTTTGCCTGGAGGAAACTGGTGGAGCTTTTCTGATGAGGCGGATATTAAAATTATGGCCA AACCGGTCACCGTGTGGCGTGCACTTACTCGCATGTGGCACCTTGTGGCTCAGGATCGTTGGGTCATTTTCGCCGCTTTTACTGCTCTCATTGTTGCAGC GCTTTCGGAAATCTCAATACCGCATTTCTTAACGGCATCGATCTTTTCAGCCCAGACTGCAACCGTTGCAGTATTCCACCGAAATGTGCGTCTCTTGGTT GCCCTATGTGTTGTAGCTGGAATTTGCAGTGGAATACGGGGTTGTTGTTTTGGCATTGCAAATATGATCCTGGTGAAGCGAATGAGGGAAACATTATATT CTGCTCTTCTTCTCCAGGATATATCATTTTTTGACAATGAAACAGTCGGTGATTTGACAAGTAGGCTTGGGTCAGATTGTCAGCAAGTGTCTCGTGTTAT TGGCAATGATCTTAATTTGATATTGCGCAATGTCCTACAGGCTACAGGTGCATTGATCTACTTGATAATTTTGTCCTGGAAACTTGGTTCATTCACACTG TTGATATGCACAACTTTAGCAGCAGTGATGCTGATCTACGGCCAGTACCAGAAGAAGGCAGCAAAGTTGACTCAAGAGTTCACTGCTTCTGCTAATGAAG TGGCGCAAGAGACATTCTCTTTGATGAGGACAGTTCGTATTTATGGAACAGAAAAGGTTGAACTTGGAAGGTACAAGCTGTGGCTGGAGAAATTGGCTAA TATAAGCTTACGACAAAGTGCTGCATATGGATTTTGGAATTTGAGTTTCAACACTCTTTATCACTCAACTCAGGTCATTGCGGTGCTAGTAGGAGGAACG TCTATTCTGGCTGGTCATATTACAGCCGAGCAACTTACAAAGTTTATATTATACAGTGAATGGCTGATATATTCTACATGGTGGGTAGGGGATAATTTAT CATCCCTGATGCAATCCATTGGGGCAAGCGAAAAGGTCTTCGGATTGATGGATCTATTGCCAAGCGACCAATTCTTATCAAAAGGATTAAAGTTGCCAAG GCTGATGGGACATATAGAGTTTGTAAATGTGGCTTTCTATTATCCTTCAAGAGAAATGGTTCCTGTACTGCGACATGTAAACATTTCAGTGCATCCCGGT GAAGTGCTTGCAATTGTTGGTCTTAGTGGTAGTGGGAAAAGCACCATAGTGAATCTGCTGCTTCGCCTTTATGAGCCAACAAATGGTCAGATTTTAATTG ATGGCTTCTCTCTTGGAGAGTTGGATATCAAGTGGTTAAGGGAGCGGATTGGATATGTTGGGCAGGAACCAAAACTATTCCACATGGATATCAGTTCAAA CATTAGATATGGATGTACACGGGATATAACACAGGAGGATGTTGAGTGGGCTGCAAAGCAGGCATATGCTCATGAGTTCATTTCGTCTCTTCCCAATGGT TACAAAACACTTGTTGATGATGATCTGCTCAGTGGGGGTCAGAAGCAGCGAATTGCCATTGCTCGTGCTATTCTTCGGGACCCAGCCATTTTGATCCTTG ATGAAGCCACTAGTGCACTGGATGCAGAGAGCGAGCACAATGTTAAGGGTGTACTTCGTGCTGTTAGAAGTGAATCAATGGCAAAGAGAACTGTAATTGT TATTGCACATAGGCTCTCCACCATACAAGCTGCTGACCGGATAGTGGTAATGGATGGTGGTCAAGTTGTTGAGATGGGCAGTCACAGGGAACTTCTCCAT CAGGATGGGTTATATGCACGATTGAATAGACGACAGGCTGACGCTGTGGCATGA
AA sequence Show only first row Show all	>Potri.010G045900.2 pacid=42797040 polypeptide=Potri.010G045900.2.p locus=Potri.010G045900 ID=Potri.010G045900.2.v4.1 annot-version=v4.1 MAVLICSSNVNLIKPRLLSSPHHHKYKQRRLIRTCRNLVRLDTGTGFQFSLHNNNNNRRRPLPPKSSSSSSSSSVNGYGSNIEQYYGSEQRVEREEGVEL NKRIRRFIEFLPSILPGGNWWSFSDEADIKIMAKPVTVWRALTRMWHLVAQDRWVIFAAFTALIVAALSEISIPHFLTASIFSAQTATVAVFHRNVRLLV ALCVVAGICSGIRGCCFGIANMILVKRMRETLYSALLLQDISFFDNETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQATGALIYLIILSWKLGSFTL LICTTLAAVMLIYGQYQKKAAKLTQEFTASANEVAQETFSLMRTVRIYGTEKVELGRYKLWLEKLANISLRQSAAYGFWNLSFNTLYHSTQVIAVLVGGT SILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSIGASEKVFGLMDLLPSDQFLSKGLKLPRLMGHIEFVNVAFYYPSREMVPVLRHVNISVHPG EVLAIVGLSGSGKSTIVNLLLRLYEPTNGQILIDGFSLGELDIKWLRERIGYVGQEPKLFHMDISSNIRYGCTRDITQEDVEWAAKQAYAHEFISSLPNG YKTLVDDDLLSGGQKQRIAIARAILRDPAILILDEATSALDAESEHNVKGVLRAVRSESMAKRTVIVIAHRLSTIQAADRIVVMDGGQVVEMGSHRELLH QDGLYARLNRRQADAVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Potri.010G045900 [exp]	0	1	ATTAP1.1
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	1.41	0.9563
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	4.69	0.9513
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	6.48	0.9416
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	7.21	0.9368
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	9.48	0.9207
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	9.94	0.9245	Pt-ACO1.4
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	11.40	0.9354
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	11.66	0.9166
AT5G65620			Zincin-like metalloproteases f...		Potri.014G010100 [exp]	12.96	0.9194
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032500 [exp]	14.07	0.9327	ZOG1.12

Compare expression of checked genes

Potri.010G045900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.