Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 47 / 5e-05 XEG113 xyloglucanase 113 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186800 [exp] 950 / 0 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 47 / 3e-05 AT2G35610 976 / 0.0 xyloglucanase 113 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006212 [exp] 581 / 0 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 349 / 1e-116 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036861 [exp] 137 / 5e-37 AT1G70630 109 / 5e-28 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 51 / 3e-06 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10027804 [exp] 49 / 8e-06 AT2G35610 927 / 0.0 xyloglucanase 113 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.010G046100.2 pacid=42800118 polypeptide=Potri.010G046112.1.p locus=Potri.010G046100 ID=Potri.010G046100.2.v4.1 annot-version=v4.1 ATGGAAGGTGACGTTTGGGTGACGCCTAACTTCACGTCTTCTCATGCGATTCCCCGTCTTGGTGGTGCTGCTTCTAATGGCCATGGCGGGTTTGTTCCTC TACCATTTCGTGGTGCTGCTTCTAATGGCCATGGCGGGTTGATTGCTCTCTCTTTGTATGCCACTCGGAGGTTACCGCCATCTTCTTTTAAGCAGACAAG ACCCCGAGGCTTAAGCCATCCAATCATCACAATATTTTCTGCACCTACTGCCCCTGGCTCCAACCAGAGTCTTGCTATTCGATCATGGCTTGCTTTGTCC CCTCAAATCACTGTCGTTTTGTTCACTCAACACCCTTCTTTTGCCTCCGCTTTTGGTTCCCGGGTTTTGGTTGATTCCACTACTGATTTCACGTTACTTG GCACCCCATTCTTTCATTCCATGCTTGAAAAATCACGGTTATACACGACAGGTATTACAGTTTTTGTTGATCCACGGACGGTTCTTCTTCTTGTGGCTTC GTTACGAAACGTTGCATACTTCCCGTTCCATTTGGATGATGCTGGGGAACACTGGCTTAGAGAGGATGGCCAAAGGGTAAGACGCCAGGAGTTGCAGGGG ATGCTTGGTCATCATTGGCAGTGGAATCATTGTGAGGACAGAATGCTTATGGCATGGAACAACAGAAATCTACCTTTACATAATGGAGTACTTCCTCCTT TCTTGTATGGCAAGGGGTTTCACATCCACTGGATCATCAATGAGGCTGTCTTTTCTGAATTTAGGCTTGTCTTCGATGCAAGTCGGACCATCTCATGTTT CTCTCTTAATTATCCTGAACACTGGTCTGAACAGTCAGGCAGAGGATCCAGTGCTTTAGAGATTGAAAACAGAAGCTGGGAAGACAGTGGGAATTCCCAT CTGGGTGCAATATATGCCTCAATGTTTTTCCATGAAATTAATTATACTGGTCTAGTAAAGCTTTTGAATTGTGAGGGGAAATATATTTTTGCTGACATAA CAGAAGACATTGTTTATCCATCTGTGTGCCAGACAGGAAGTCAGAAAAATATGGATTCTGCTGAAAATGTCAAATCACAAAACAGAATATTAAATTGCTT TCTGAGAGATCAGTTAAAGTCATTGGGCTCATTAGATTTTCCATTTTCTTTGGAGTCACTCCTTTCAATAACTGCAGACAAGAATAAAACAATCGTGCTT GCTGTTGCTGGATATAGTTACAAGGACATGCTAATGAGTTGGGTGTGCAGATTACGCCTCCTCCAGGTCACAAATTTCATCATTTGTGCTCTTGATCATG AAACATATCAGTTCTCTGTCTTACAGGGCTTACCTGTTTTCCATGATCCATCAGCCCCAAGAAACATCAGCTTTGACGATTGCCACTTTGGAACAGCATG CTTTCAGAGAGTCACCAAAGTGAAGTCCAGAATGGTTTGGAAGATACTGAAACTCGGGGGACCTGTAAACTTACCCAGGCGATTGAACTCTGCTGCTATG GAGAAGGTGGTAAAGCATGCAGCAACATCAAACCTGTCTGAACAGCCTAGCTTCTATGACACATTGTGTGGAGAAGGTGGATCCTATCGTATCAGTGATA ACAGCTGTGTGGAACCTGAAACAAATCTGACTGTTCATTTCTTGGATAGGAACCTCTTCCCTAACGGTGCATACTTAAACCTATTGCAGAAGAAAAATGT GAAAAAGACCTGTATGATGAGGGGTTGTCTTGCTCTTCATAACAACTGGATTAGTGGGAGGATGAAGAAATTGGACCGACAGATTGTGTCCGGTTTGTGG GAGTATGATACTAGCAGAATGTGCCTGCAAAGATAG
AA sequence Show only first row Show all	>Potri.010G046100.2 pacid=42800118 polypeptide=Potri.010G046112.1.p locus=Potri.010G046100 ID=Potri.010G046100.2.v4.1 annot-version=v4.1 MEGDVWVTPNFTSSHAIPRLGGAASNGHGGFVPLPFRGAASNGHGGLIALSLYATRRLPPSSFKQTRPRGLSHPIITIFSAPTAPGSNQSLAIRSWLALS PQITVVLFTQHPSFASAFGSRVLVDSTTDFTLLGTPFFHSMLEKSRLYTTGITVFVDPRTVLLLVASLRNVAYFPFHLDDAGEHWLREDGQRVRRQELQG MLGHHWQWNHCEDRMLMAWNNRNLPLHNGVLPPFLYGKGFHIHWIINEAVFSEFRLVFDASRTISCFSLNYPEHWSEQSGRGSSALEIENRSWEDSGNSH LGAIYASMFFHEINYTGLVKLLNCEGKYIFADITEDIVYPSVCQTGSQKNMDSAENVKSQNRILNCFLRDQLKSLGSLDFPFSLESLLSITADKNKTIVL AVAGYSYKDMLMSWVCRLRLLQVTNFIICALDHETYQFSVLQGLPVFHDPSAPRNISFDDCHFGTACFQRVTKVKSRMVWKILKLGGPVNLPRRLNSAAM EKVVKHAATSNLSEQPSFYDTLCGEGGSYRISDNSCVEPETNLTVHFLDRNLFPNGAYLNLLQKKNVKKTCMMRGCLALHNNWISGRMKKLDRQIVSGLW EYDTSRMCLQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	0	1
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	4.47	0.8332
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	4.89	0.7794
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	4.89	0.8338	SDG906,SUVH3.3
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	4.89	0.7964
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	5.65	0.8052
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	10.19	0.7953
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	10.95	0.8287
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	12.48	0.7584
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G184800 [exp]	12.96	0.7952
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	13.78	0.7994

Compare expression of checked genes

Potri.010G046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.