Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12970 493 / 5e-173 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G26500 466 / 3e-162 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT3G11330 396 / 3e-134 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 395 / 9e-134 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT4G35470 190 / 3e-54 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G19330 179 / 7e-52 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G26050 178 / 3e-51 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G29880 171 / 1e-48 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT2G17440 171 / 1e-47 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 107 / 1e-24 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085600 [exp] 424 / 3e-145 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.015G083800 [exp] 414 / 3e-141 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.006G072700 [exp] 188 / 2e-55 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.018G139700 [exp] 187 / 6e-55 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.005G098600 [exp] 186 / 1e-52 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 182 / 4e-51 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 175 / 6e-49 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 172 / 4e-48 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.011G121700 [exp] 111 / 5e-26 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017948 [exp] 379 / 7e-127 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 366 / 2e-123 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10035976 [exp] 195 / 3e-56 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10003229 [exp] 181 / 2e-52 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10016684 [exp] 186 / 5e-51 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 174 / 8e-49 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 146 / 7e-41 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10035622 [exp] 102 / 2e-25 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 101 / 3e-24 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 101 / 4e-24 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G046500.1 pacid=42798076 polypeptide=Potri.010G046500.1.p locus=Potri.010G046500 ID=Potri.010G046500.1.v4.1 annot-version=v4.1 ATGGAAATGGATTCCATTTCCAAAAAAAACGATGATTTCCCAATTCTTTCCTATCTTCTATCCCAAACTGATCCAAACTCTCAACAGTTTGATCAAAACC TGTCAGCCCATTTTCCCTATTTGAACTACCCAAAGGTCCTCTCCTCGCTGACCCAAGCCATCCCCTCCTCCGCCACCAATATCTTCCTCCTCCTCAAATC TCTCGGTCCTCGACCCAACCCAGACGTTGTCTCCATGGCCCGATCCAACTTGACCCAGATGCAAGAACCAGGTAAAACGGAGATATACAAGGCAGTGTTG AAGTTTGAGGAGATGCATGAGGAATATGAGAGGCAGTTAAAGGAAGTAGAAGAGATGCTTGTTGGTGTTTATAAGGATGTTGTTGTAAGAGAGATAGAGA GCGGTGAGCAAGTTGATGAGGAGGTTGTTGCTATACTTAGAGAAGCAGAGAGTGGTGGGGCTGTGGAACGAGTGAATCTTTCTGCGCGTCAGTTGAGGTT GATTCCTGAATCCATTGGCAGACTTCATGGCTTGCTTGTGCTCAATCTCTCTCAAAATCAGTTAGAGGTCCTTCCTGATTCAATTGCGGGACTTGAGAAA CTTGTGGAGCTTGATGTGTCTTCCAATCTTTTAGTTTTCCTGCCAGATTCAATTGGATTGTTGCGAAATCTTAAGATCCTAAATGTGTCAGCAAACAAGG TGAAGGCCCTCCCTGAGAGCATTGCTCTTTCCAGTTCACTGGTGGAGATAGATGCAAGCTTTAACAACTTGGTATCTTTGCCGGCTAATATTGGATATGG ACTGGTGAATCTTGAAAGGCTTTCAGTTCAGTTGAATAAGATCCGTCTTCTTCCACCTTCTATTTGTGAAATGAAGTCTTTGAGATTTTTGGATGTTCAT TTCAATATGCTGCGAGGCCTGCCACGAGCAATAGGGAGATTAACAAATTTAGAGGTCCTGAATCTGAGCAGTAATTTCAGTGACTTGGAAGAGCTTCCTG AAGAAATTGGTGATTTAATTAACCTCAGGGAGCTCGATCTCAGCAACAACCAAATCCGAGCTCTTCCTGACAGGTTTGCCAGGCTAGAAAATCTAACCAA GCTCGACTTGAATGAAAATCCACTGTTAGTTCCGCCAAAAGAGATAGTGAATAAGGGGGTTCAAGCTATAAGGGAATTTATGGCAAAGAGGTGGCTGGAT ATGGTAGAGGAAAAGCAGACGAACATGGTCGAGGCAAACCAGCAAGCAGCGCAGAGTGGGTGGCTGGTATGGGGCTCCTCCATGGTTAGTAACTTTGTTT CCGGGGTTTCCCAAAGTGTTTCAGGTTATCTAGGAGAAACATCTCCAAAAGATCCTTATCTGGACCAACTGCTCTGA
AA sequence Show only first row Show all	>Potri.010G046500.1 pacid=42798076 polypeptide=Potri.010G046500.1.p locus=Potri.010G046500 ID=Potri.010G046500.1.v4.1 annot-version=v4.1 MEMDSISKKNDDFPILSYLLSQTDPNSQQFDQNLSAHFPYLNYPKVLSSLTQAIPSSATNIFLLLKSLGPRPNPDVVSMARSNLTQMQEPGKTEIYKAVL KFEEMHEEYERQLKEVEEMLVGVYKDVVVREIESGEQVDEEVVAILREAESGGAVERVNLSARQLRLIPESIGRLHGLLVLNLSQNQLEVLPDSIAGLEK LVELDVSSNLLVFLPDSIGLLRNLKILNVSANKVKALPESIALSSSLVEIDASFNNLVSLPANIGYGLVNLERLSVQLNKIRLLPPSICEMKSLRFLDVH FNMLRGLPRAIGRLTNLEVLNLSSNFSDLEELPEEIGDLINLRELDLSNNQIRALPDRFARLENLTKLDLNENPLLVPPKEIVNKGVQAIREFMAKRWLD MVEEKQTNMVEANQQAAQSGWLVWGSSMVSNFVSGVSQSVSGYLGETSPKDPYLDQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	0	1
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	1.00	0.9428
					Potri.017G027900 [exp]	3.87	0.9303
					Potri.009G149000 [exp]	5.38	0.9067
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025500 [exp]	5.47	0.9335
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	5.65	0.9313	Pt-WRKY6.1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	6.16	0.9407	PtrProT5
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.013G149100 [exp]	6.32	0.9132
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	6.48	0.9248
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	6.92	0.9270
AT3G10190			Calcium-binding EF-hand family...		Potri.016G040900 [exp]	7.61	0.8897

Compare expression of checked genes

Potri.010G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.