Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67900 861 / 0 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 536 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G47800 437 / 8e-147 Phototropic-responsive NPH3 family protein (.1) AT2G14820 437 / 4e-146 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 399 / 7e-132 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 396 / 9e-131 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G31820 375 / 6e-123 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G23050 370 / 9e-122 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT1G30440 323 / 2e-101 Phototropic-responsive NPH3 family protein (.1) AT5G03250 317 / 7e-100 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186100 [exp] 1083 / 0 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.006G003000 [exp] 475 / 1e-161 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G003700 [exp] 463 / 1e-156 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 460 / 4e-155 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 450 / 2e-151 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 448 / 2e-150 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 443 / 1e-148 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 427 / 2e-142 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 359 / 3e-115 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000443 [exp] 840 / 0 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10033796 [exp] 452 / 1e-151 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 451 / 2e-151 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10039099 [exp] 443 / 1e-148 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 431 / 8e-144 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 391 / 1e-128 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10038763 [exp] 390 / 1e-128 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 382 / 2e-125 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 372 / 9e-117 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 338 / 1e-107 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.010G046800.6 pacid=42798042 polypeptide=Potri.010G046800.6.p locus=Potri.010G046800 ID=Potri.010G046800.6.v4.1 annot-version=v4.1 ATGAAGTTTATGAAACTCGGATCCCGACCGGACACCTTCTACACTGCTGAGGCTGTCAGGTCTGTCTCCTCTGAAGTTTCTAGTGACCTTATAGTTCAAG TGACTGGAAGTAGATATTTGCTTCACAAGTTTCCTCTTCTTTCCAAGTGTTTGCGCCTACAGAGACTATGCTCTGAATCCCCTGAATCCTCACAACACCA AATAGTCCAGCTCCCTGATTTTCCCGGTGGGGTTGAGGCATTTGAACTCTGCGCAAAGTTCTGTTATGGTATTACAATCACTATTAGTGCCTACAACATT GTTGCAGCGAGATGTGCGGCCGATTACCTGCAGATGACAGAGGATGTTGAGAAGGGGAACCTAATATACAAGCTTGAAGTTTTCTTCACTTCTTGCCTAC TTCATGGGTGGAAAGATGCTATTGTCACTCTACAGAGCACCAAAGCATTTCCTTTGTGGTCAGAAGACCTTGGAATTACAAGCAGATGCATTGAAGCTAT TGCCTCTAAAGTCTTAACTCATCCCTCAAAGGTGAGTTTGTCGCATAGTTACTCTAGAAGGGAAAGGGATGATGTGTCTTGTAATGGAGCAGAGAGCCAG AGGCTTAAACCAGCAAGCAAAGGTTGGTGGGCTGAAGATATGGCCGAATTAGGCATAGACCTATATTGGAGAACCATGATGGCAGTTAAATCCGGTGGAA AGATACCATCTAACCTCATTGGGGAGGCCTTGAAAATCTACGCAGCTCGATGGCTACCTAACATATCAAGAGAACGAAATTTTAATAAGCAAGTAGGATC TGACTCGGATTCAGACTCGACCAACGAGACAACTTCAAAGCATAGGCTGTTTCTAGAAACAATAGTAAGCTTACTCCCAGCAGAGAAAGGTGCTGTAACT TGCAGTTTCCTTCTCAAACTTTTGAAAGCAGCCAATATTCTCAATGGCTCCTCATCTTCAAAGATGGAATTGACCAGAAGAGCGGCACTTCAATTAGAGG AAGCAACAGTAAGGGATCTGTTAATACCCTCCATCTCACTTGCAAATGATACAGTGTATGATGTAGACTTGGTCATCACCATATTGGAGCAGTTCATGTT ACACGGGCAGAGTCCTCCCACCAGCCCTCCAAGATCCAAGCTGGGGTTTGAAAGGAGGAGGTCTCGGTCAGCAGAGAATATTGACTTGGAGTTTCAAGAG AGGAGGAGGTCTTCTTCAGCATCACATAGCTCAAAGTTGAAGGTGGCTAAGCTTGTGGATGGTTATCTTCAAGAGATTGCCCGAGACGTGAATTTACCTC TTTCGAAATTCATTACACTTGCTGAGGCCATTCCAGATTTCTCAAGGCTTGATCATGATGATCTCTACAGAGCCATTGACATTTATCTCAAGGCACATCC AGACCTAAACAAGAGTGAAAGAAAACGGTTGTGCAGAGCCCTAGACTGCAAGAAACTATCGGTCGAAGCCTGCATGCATGCTGCGCAGAATGAGTTACTC CCACTGAGGGTGGTGGTACAAGTTCTCTTCTTTGAGCAAGCTAGAGCAGCCATGGGTGGTGGCAAAGTCACTGAGCTGCCTAGCAACATCAAAGCACTAC TTGCTGCACATAATATTGATCCATCAAGGCCAACAGCTGCATTAAGCACAACTACTAGCATTCAAGCAGATGACCAATGGAGTGTCTCAGGCTTCAAATC ACCAAAATCTAAGGTGTCAACACTAAGGATGAAAATGGCTGAAGATGAATTAGATGTAAGTGATCTGCAATCAGATGGACTAGGGAGGAGTTCCAAGTTT AAGGCTTTCTGCGCTCTTCCTACGAGACCGAAAAGGATGTTCAGTAAGTTGCTGTCCATGAATAGAAATTCCAGTGAAAAAAATTGA
AA sequence Show only first row Show all	>Potri.010G046800.6 pacid=42798042 polypeptide=Potri.010G046800.6.p locus=Potri.010G046800 ID=Potri.010G046800.6.v4.1 annot-version=v4.1 MKFMKLGSRPDTFYTAEAVRSVSSEVSSDLIVQVTGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVEAFELCAKFCYGITITISAYNI VAARCAADYLQMTEDVEKGNLIYKLEVFFTSCLLHGWKDAIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRERDDVSCNGAESQ RLKPASKGWWAEDMAELGIDLYWRTMMAVKSGGKIPSNLIGEALKIYAARWLPNISRERNFNKQVGSDSDSDSTNETTSKHRLFLETIVSLLPAEKGAVT CSFLLKLLKAANILNGSSSSKMELTRRAALQLEEATVRDLLIPSISLANDTVYDVDLVITILEQFMLHGQSPPTSPPRSKLGFERRRSRSAENIDLEFQE RRRSSSASHSSKLKVAKLVDGYLQEIARDVNLPLSKFITLAEAIPDFSRLDHDDLYRAIDIYLKAHPDLNKSERKRLCRALDCKKLSVEACMHAAQNELL PLRVVVQVLFFEQARAAMGGGKVTELPSNIKALLAAHNIDPSRPTAALSTTTSIQADDQWSVSGFKSPKSKVSTLRMKMAEDELDVSDLQSDGLGRSSKF KAFCALPTRPKRMFSKLLSMNRNSSEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.010G046800 [exp]	0	1
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	7.74	0.8218
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	13.22	0.7737
AT5G52990			SNARE-like superfamily protein...		Potri.012G016400 [exp]	14.69	0.7538
AT1G67480			Galactose oxidase/kelch repeat...		Potri.008G176000 [exp]	20.04	0.7771
AT1G11120			unknown protein		Potri.004G037200 [exp]	49.19	0.7601
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G238300 [exp]	52.48	0.7401
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	62.35	0.7449
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	73.89	0.7415	Pt-MYR1.2
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	74.29	0.7515
					Potri.017G128500 [exp]	79.37	0.7401

Compare expression of checked genes

Potri.010G046800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.