Plant FIBer expression Database

Potri.010G047000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G185900
[exp]
76 / 1e-19 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006216
[exp]
37 / 0.0001 ND /
Lus10036864
[exp]
36 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Potri.010G047000.1 pacid=42798155 polypeptide=Potri.010G047000.1.p locus=Potri.010G047000 ID=Potri.010G047000.1.v4.1 annot-version=v4.1
ATGGTATTCACAAACTCTCCAGAACGTGCAAAGCAGAATCATGCCAAGCACCCTAGAAATAACTGGGAGACCACGAATGGGCACGGCCGAGTTGTAGAGC
ATGAGAGAGCCCCTGAAGCACGCGTTAAGGCTGGTGAGTTTGATGAAAATGTCGACGATGAAGCCGAGGAGTTCATCAAGCTAGAGCATAAGAAGTTTGA
ATTGTGCAGGAGGATGTCAAACAAAGCTGGGTGA
AA sequence
>Potri.010G047000.1 pacid=42798155 polypeptide=Potri.010G047000.1.p locus=Potri.010G047000 ID=Potri.010G047000.1.v4.1 annot-version=v4.1
MVFTNSPERAKQNHAKHPRNNWETTNGHGRVVEHERAPEARVKAGEFDENVDDEAEEFIKLEHKKFELCRRMSNKAG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G047000
[exp]
0 1
AT5G15100 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux car... Potri.004G124200
[exp]
2.44 0.9255
Potri.010G132101
[exp]
2.64 0.9275
AT4G15450 Senescence/dehydration-associa... Potri.006G164748
[exp]
6.70 0.9179
AT3G21690 MATE efflux family protein (.1... Potri.004G016400
[exp]
7.34 0.8955
Potri.014G030600
[exp]
8.36 0.8933
AT5G40270 HD domain-containing metal-dep... Potri.008G190200
[exp]
14.49 0.8531
AT2G23260 UGT84B1 UDP-glucosyl transferase 84B1 ... Potri.007G049600
[exp]
16.24 0.8646
AT2G39830 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA... Potri.010G197500
[exp]
17.88 0.8879
AT5G09220 AAP2 amino acid permease 2 (.1) Potri.013G103500
[exp]
21.56 0.8808
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Potri.018G006000
[exp]
22.62 0.8932 Pt-VHA1.1

Potri.010G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.