Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) AT1G24580 101 / 9e-29 RING/U-box superfamily protein (.1) AT2G04240 84 / 2e-21 XERICO RING/U-box superfamily protein (.1.2) AT3G61460 67 / 8e-15 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 62 / 8e-13 RING/U-box superfamily protein (.1) AT1G63170 62 / 3e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01150 59 / 5e-12 RHA2B RING-H2 finger protein 2B (.1) AT4G32600 61 / 1e-11 RING/U-box superfamily protein (.1) AT3G61180 59 / 4e-11 RING/U-box superfamily protein (.1) AT5G45290 59 / 6e-11 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185800 [exp] 187 / 2e-62 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 92 / 1e-24 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.014G087700 [exp] 71 / 3e-16 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 69 / 2e-15 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 66 / 2e-14 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 65 / 4e-14 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.005G081200 [exp] 62 / 1e-12 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 61 / 2e-12 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.008G125700 [exp] 60 / 4e-12 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011416 [exp] 137 / 2e-42 AT1G67856 124 / 1e-37 RING/U-box superfamily protein (.1) Lus10019150 [exp] 67 / 6e-15 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10008283 [exp] 64 / 2e-13 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10007936 [exp] 63 / 2e-13 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10008106 [exp] 66 / 3e-13 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10007937 [exp] 63 / 3e-13 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10013475 [exp] 63 / 3e-13 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10036378 [exp] 64 / 4e-13 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10013144 [exp] 64 / 7e-13 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10034407 [exp] 61 / 8e-13 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G047100.1 pacid=42799354 polypeptide=Potri.010G047100.1.p locus=Potri.010G047100 ID=Potri.010G047100.1.v4.1 annot-version=v4.1 ATGGGGCTCTCAAGTTTCCCTGGTGCAGCTGAAGGAGTGCTGCCTGTGCTGGTAATGAACACAGTCTTATCAGTTGCTCTGCTTAAGAGCATGGTGAGGT CAGTGCTGCAATTAGTGGTGGGTGCAAATTGGACTCCGCCAGATTATGAGGAAGAACCAGACGAGTATCGTCGAGAAAATGCGAGAGAGAGAAGAATATC AATAACCCAGTTCAAGTCTTTGAACCAGAATGATGGCGGTGCTAGGAATAGTGCCATGGAATGTTGTGTGTGCCTTTGTGGGTTTGAAGCTGAAGAGGAG GTGAGTGAGCTTTCTTGCAAGCATTTCTTCCACAGAGGTTGTTTAGACAAGTGGTTTGATAACATCCATGCTACCTGCCCTCTTTGTCGATCTAACCTTT AA
AA sequence Show only first row Show all	>Potri.010G047100.1 pacid=42799354 polypeptide=Potri.010G047100.1.p locus=Potri.010G047100 ID=Potri.010G047100.1.v4.1 annot-version=v4.1 MGLSSFPGAAEGVLPVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRRENARERRISITQFKSLNQNDGGARNSAMECCVCLCGFEAEEE VSELSCKHFFHRGCLDKWFDNIHATCPLCRSNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67856			RING/U-box superfamily protein...		Potri.010G047100 [exp]	0	1
					Potri.015G001700 [exp]	3.60	0.9007
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101950 [exp]	5.91	0.8761
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	8.83	0.8907
AT5G66900			Disease resistance protein (CC...		Potri.007G038700 [exp]	12.84	0.8562
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	13.78	0.8775
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	14.07	0.8768
AT5G42720			Glycosyl hydrolase family 17 p...		Potri.014G183000 [exp]	17.20	0.8731
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183500 [exp]	18.16	0.8707
AT5G55980			serine-rich protein-related (....		Potri.001G371400 [exp]	19.89	0.8515
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	21.49	0.8572	ATCSLD4.1

Compare expression of checked genes

Potri.010G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.