Plant FIBer expression Database

Potri.010G047500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67840 677 / 0 CSK chloroplast sensor kinase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006470
[exp]
680 / 0 AT1G67840 640 / 0.0 chloroplast sensor kinase (.1.2)
Lus10011413
[exp]
676 / 0 AT1G67840 644 / 0.0 chloroplast sensor kinase (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G047500.1 pacid=42799034 polypeptide=Potri.010G047500.1.p locus=Potri.010G047500 ID=Potri.010G047500.1.v4.1 annot-version=v4.1
ATGCTCCTCTCCGCAATCCCTCGCTCAAGCTCGAACTCTCTCCTCCTCCTCCGCAATCACAGTCTCACTTCCACTTCCACTTCATCTCCTACTGCTACTA
ACCTCCTCTCCACCGCCACCACCCTCAAGCCACTCCTACGAGCCCCCTCTGCCTCTTCCCTAACCGCCAGCAACGGCAATCTCGAAAATCCTATCCATCA
CGTGACTCACTCGCTCTCAGATGACGATGAGGAAGCTGGAGGAGGATCGGGGTTGGTGTCGTCGGCATCCGCCGTTGCTTCTGCTATTCGAAGAGGTTCT
AGTTCATCAGTGGAGTTTGTACAGAGAATAGAGAAGGGTCAGAACAACAACGACAACAAGACCAAATTGGTGCTACCCAGCCCTGATTTTCAGAGACTTT
GCGTCCAACAACTCGACCTCTTTCACAGAATCGTCGATCCCGACGCTATTCTCTCCGTTTATGTGAGGCCGGCAGGTAGTTATGTAATGGACCGTTTAGA
GCTCCGTCGAGTGACGTCATATCCCGGAGTGAATGCATCATCATCAGATATTGTGATATTAGTCGCTAATTTCAATATCCCAACTGGATTACGTGCTGCA
GAAGCTGCATTTTCTAGTAAACAAGCAGAATGCGTGGCTGAGCATAGAGCTGTTGTGTTTCCAATGGTAAAGCACCCTTTTGTTGTTGGGTTCTTGGTTG
CTGAGCTACCGATGATGGAAATGGACATATCATGTGCAAATGGGGAAAGTGATTTGATTTCTCCAGAGGAAGCCTATGCTTCGCCTTCTGCCTCCTTTAA
AAAATCGAAATCGTGGAGCATCCAGACTTTAAATGATGAGCCATTGAGGATGTTTAACTTTACAGCTGAGCAGAGATTGAATGCTATTAATATTTCACAT
ACTCTAGCCATGGCTTATGTGATGGATCAGAAAGCATTGTTACTTCAGCAATCTTCATGGCAAAATAATGTCAGAATGACAACTCTGGTTGAGCAGATTC
GTGGTCCTCTCTCTAGCATTAGAACTTTAAGTAAAATGTTATCAATTCACACGAAGAGAAGCGAGATTGCTTATGACATTGTTGAAGACATAATTGTTCA
AGGTGATAGTGTGAGAGACGCCCTTCAAGAACTCCAGGATGCTGTTTACTTGACCAAGGCCAATATAGTGCGGTACAATGAAGAGACATTAATGAAAATT
CACAATTCAGCGTATGCCCATCCAGAGTCAATGAGATCTCAATTACCAGAAGACTTCTTGAATGATAGCAGCGATAAGTTGCAAACTCCTGGCAAACCAC
GTTTTCTAAATCCTGCATCCAAGGACATGGAGATGCCCATGCCACCTTTGGCTCTTTCTCCTCTACAACAACATGGAATACGACCATGCAATGTTTCTGA
GGTGCTGTCAGATTTGGTTGAGGCGGCAATACCTCTTGCCAATAAGCAGCAACGTATTCTAGAACTCGGTGAACTTTCTCAATCTCTGCAAGTTGCCATA
GAAGAACCAGCTTTACGCCAGGCTCTGAGCAATTTAATTGAGGGTGCATTATTGCGTACACATGTTGGTGGCAAAGTTGAAATTGTATCTACTGGAGCAC
CAGCAGGTGGTGCTCTTGTAGTTATTGACGATGATGGCCCTGATATGCACTACATGACCCAGATGCGTTCGCTTATACCATTTGGAGCAGAGCTCTTCTC
AGAAAACATGGTCGAAGACAACATGACATGGAATTTTGTTGCTGGGCTGACTGTTGCTCGTGAGATACTTGAGAATTATGGTTGTGTGGTTCGTGTCATA
TCACCTCGAGTCTCAGACGCAGCCCTTGGAACTGGGGGAACCAGGATAGAACTCTGGCTTCCTTCTTTTGCCTCGTCCGATCAAAATGACCTTGCTCACG
AAGCTTAG
AA sequence
>Potri.010G047500.1 pacid=42799034 polypeptide=Potri.010G047500.1.p locus=Potri.010G047500 ID=Potri.010G047500.1.v4.1 annot-version=v4.1
MLLSAIPRSSSNSLLLLRNHSLTSTSTSSPTATNLLSTATTLKPLLRAPSASSLTASNGNLENPIHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGS
SSSVEFVQRIEKGQNNNDNKTKLVLPSPDFQRLCVQQLDLFHRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAA
EAAFSSKQAECVAEHRAVVFPMVKHPFVVGFLVAELPMMEMDISCANGESDLISPEEAYASPSASFKKSKSWSIQTLNDEPLRMFNFTAEQRLNAINISH
TLAMAYVMDQKALLLQQSSWQNNVRMTTLVEQIRGPLSSIRTLSKMLSIHTKRSEIAYDIVEDIIVQGDSVRDALQELQDAVYLTKANIVRYNEETLMKI
HNSAYAHPESMRSQLPEDFLNDSSDKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQHGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAI
EEPALRQALSNLIEGALLRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMTQMRSLIPFGAELFSENMVEDNMTWNFVAGLTVAREILENYGCVVRVI
SPRVSDAALGTGGTRIELWLPSFASSDQNDLAHEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67840 CSK chloroplast sensor kinase (.1.... Potri.010G047500
[exp]
0 1
AT1G74850 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid... Potri.015G069100
[exp]
7.21 0.9505
AT4G36910 CBSX1, CDCP2, L... LOSS OF THE TIMING OF ET AND J... Potri.007G046400
[exp]
13.19 0.9443
AT1G36320 unknown protein Potri.005G170400
[exp]
17.14 0.9316
AT5G26742 EMB1138 embryo defective 1138, DEAD bo... Potri.005G000500
[exp]
17.37 0.9449
AT3G05350 Metallopeptidase M24 family pr... Potri.013G021400
[exp]
20.19 0.9434
AT5G03900 Iron-sulphur cluster biosynthe... Potri.004G090400
[exp]
21.21 0.9433
AT3G02690 nodulin MtN21 /EamA-like trans... Potri.012G145300
[exp]
23.87 0.9381
AT1G75730 unknown protein Potri.005G238800
[exp]
24.18 0.9334
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.010G022400
[exp]
25.45 0.9396
AT5G57960 GTP-binding protein, HflX (.1) Potri.002G031100
[exp]
26.05 0.9403

Potri.010G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.