Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67820 399 / 8e-137 Protein phosphatase 2C family protein (.1) AT1G07160 253 / 2e-80 Protein phosphatase 2C family protein (.1) AT2G30020 249 / 7e-79 Protein phosphatase 2C family protein (.1) AT2G40180 247 / 4e-78 ATHPP2C5 phosphatase 2C5 (.1) AT4G31750 171 / 8e-50 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 161 / 9e-45 Protein phosphatase 2C family protein (.1) AT4G08260 153 / 3e-44 Protein phosphatase 2C family protein (.1) AT5G10740 157 / 5e-44 Protein phosphatase 2C family protein (.1) AT1G43900 155 / 5e-43 Protein phosphatase 2C family protein (.1) AT5G53140 141 / 1e-37 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073000 [exp] 265 / 9e-85 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 264 / 2e-84 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 241 / 4e-76 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.010G187000 [exp] 235 / 1e-73 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 224 / 2e-68 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 223 / 3e-68 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 171 / 7e-50 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 169 / 2e-49 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 151 / 8e-42 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006222 [exp] 460 / 1e-160 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 457 / 6e-160 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 241 / 4e-76 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 241 / 4e-76 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 201 / 7e-61 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 166 / 2e-48 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 166 / 2e-48 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 164 / 6e-47 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 161 / 3e-46 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 153 / 2e-42 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.010G047600.1 pacid=42799353 polypeptide=Potri.010G047600.1.p locus=Potri.010G047600 ID=Potri.010G047600.1.v4.1 annot-version=v4.1 ATGGACAAGATACCCACCAAGGAATCATCATTAGCTATAGCTGCTGCTTGTAGTTCTTTGAAGCGAAAGAGACCGCCCATGATTGAGATCCCAAATGTGC TCCAAGAAATCCACACTGTTAATAGTCATACCAGTACGAAACCCCGTTTCCAAGAACTCACTCCCAGGAACACTGCCCTTTCTTTCAGTGGGAATGGTGT TGGTGTCTCTGCTATCAAAGGCAAGAAAAAATTCATGGAAGATACCCACAAGATTGTTTCTTGCTTGCATGGCAACTCAAACCAAGGATTTTTTGGAGTT TATGATGGGCATGGAGGCAAAAAGGCAGTGGAGTTTGTTGCAGAGAATTTGCACGTAAATATTCTTGAAAAGATGGTGAATTGTGATGCAGGGAATGTTT CCAAAGAGGAAGCTGTTAAAGCTGGGTATTTGAAAACTGACCAGGATTTCTTGAAACAGGGTTTAGTCAGTGGCGTTTGCTGTGTCACAGCCTTAATTGA AGGGCAGGAGGTTGTTATCTCAAACTTAGGAGACTGTAGAGCTGTTCTTTGTAGAGGAGTAGTAGCTGAAGCCCTTACAGAAGATCATAGAGCAGCACAG GAGGATGAACGTAAAAGGATAGAGGATAAGGGAGGATATGTTGAGATTCATCGAGGTGCATGGAGAGTTCATGGGATACTTTCTGTTTCTAGAAGCATTG GAGATGCTCATCTGAAGGACTGGGTACTGGCTGAGCCGGATACAAAGATCCTGAAGCTGAGTCCGGACATGGAATTTCTCGTCTTAGCTTCTGATGGACT GTGGGACGAGGTTGGGAACCAAGAAGCTGTTGACATGGTAATTTCATTGTGTATGGCTGAGAAGAATGTGGGAACCACAGGAGATATTCCAGAAGATAAT GATATTGATTATGGTTGTGTAAATGTAAGCCCTTCATCTAAGTTGCGGCGGATATCACTTGTCAAGCAACAAAAAGAGTCCAGACACTCACCAAGCTATA AGAAGAAGGCTTGCAGCTGGAAAGACAATGAAGATGATTTTGCATGTGAAAATGAAAGTCCTCCAACAAAGTCAAGAAAAATTTCATTGGCCAAGCGAGT AAACATCAAGACTGAGTCTCCTATTAAAGAAAATAGTTGGTACAAGAAGAGATCTGCCTCTGTGGTGCTTGAGAATGCTTGTAAGGAGCTTGTGAACCTT GCTGTGAGTAGGGGTAGTTTGGATGACATTACAGTAATGATAATTGATTTGAATCATTTCAGACATAACAGTTGA
AA sequence Show only first row Show all	>Potri.010G047600.1 pacid=42799353 polypeptide=Potri.010G047600.1.p locus=Potri.010G047600 ID=Potri.010G047600.1.v4.1 annot-version=v4.1 MDKIPTKESSLAIAAACSSLKRKRPPMIEIPNVLQEIHTVNSHTSTKPRFQELTPRNTALSFSGNGVGVSAIKGKKKFMEDTHKIVSCLHGNSNQGFFGV YDGHGGKKAVEFVAENLHVNILEKMVNCDAGNVSKEEAVKAGYLKTDQDFLKQGLVSGVCCVTALIEGQEVVISNLGDCRAVLCRGVVAEALTEDHRAAQ EDERKRIEDKGGYVEIHRGAWRVHGILSVSRSIGDAHLKDWVLAEPDTKILKLSPDMEFLVLASDGLWDEVGNQEAVDMVISLCMAEKNVGTTGDIPEDN DIDYGCVNVSPSSKLRRISLVKQQKESRHSPSYKKKACSWKDNEDDFACENESPPTKSRKISLAKRVNIKTESPIKENSWYKKRSASVVLENACKELVNL AVSRGSLDDITVMIIDLNHFRHNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	5.29	0.9376
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.006G104300 [exp]	6.00	0.9428	Pt-RHG1.3
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	6.85	0.9476
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	6.92	0.9428	ATCSLD5.1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.015G131400 [exp]	7.81	0.8971
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	10.48	0.9404	Pt-CYCMS1.1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	12.96	0.9226	CDKB2.1
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	14.07	0.9383	ATK1.2
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	15.23	0.9407
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	18.00	0.9174

Compare expression of checked genes

Potri.010G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.