Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) AT4G12690 222 / 3e-71 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT2G04220 220 / 3e-70 Plant protein of unknown function (DUF868) (.1) AT5G28150 194 / 2e-60 Plant protein of unknown function (DUF868) (.1) AT3G04860 189 / 2e-58 Plant protein of unknown function (DUF868) (.1) AT3G13229 160 / 3e-47 Plant protein of unknown function (DUF868) (.1) AT2G27770 117 / 1e-30 Plant protein of unknown function (DUF868) (.1) AT5G11000 106 / 6e-26 Plant protein of unknown function (DUF868) (.1) AT2G25200 91 / 1e-20 Plant protein of unknown function (DUF868) (.1) AT2G36470 53 / 8e-08 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084500 [exp] 369 / 1e-128 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 363 / 3e-126 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.005G068100 [exp] 229 / 1e-73 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 215 / 3e-68 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 200 / 1e-62 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 199 / 4e-62 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 196 / 6e-61 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 184 / 3e-56 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 182 / 1e-55 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006223 [exp] 334 / 2e-115 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10036872 [exp] 298 / 3e-101 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10043317 [exp] 276 / 6e-92 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 275 / 2e-91 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 215 / 5e-68 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 208 / 2e-65 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 178 / 5e-54 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 174 / 2e-52 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 173 / 4e-52 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 172 / 2e-51 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [poplar] [flax] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Potri.010G047700.1 pacid=42799444 polypeptide=Potri.010G047700.1.p locus=Potri.010G047700 ID=Potri.010G047700.1.v4.1 annot-version=v4.1 ATGCCTGATTCATTAGGTATCCCTGCCTGCTTCTCCTCTGGTGAGAGGCAAATTGTTGAGCCAGGGGCTAATGTAACCAGGTCAGGCCAGAGTGTGTTCA TGTCTGTGTATCGAACAAAGTTAGCTGGTCTCTGCCGTTTGATCATCATTACATGGTGCAAGAATCTCTTGATGCATGGCTTGTCTATTTCTGTTCAAGC AACGAATGGAAGCGAGCATCATCAGTGCAAGGTCGAGCTTAAGCCATGGAACTTTTGGAGAAAACAAGGTTCAAAGCAATTCATAGTAGATGGTAGGGCT GTTGATGTGGTCTGGGACCTTAAGGCCGCAAAGTTCAATGGGGAGACGGAGCCACAATCAGACTACTATGTTGCTATTGTCTGCGAAGAAGAGGTGGTTC TACTTGTTGGAGATTTAAAGAAAGATGCCTACCGAAAGACAGGCTGTAGGCCTGCTCTTATTGAGCCGATGCTGGTGTCAAGGAAGGAACACGTATTTGG CAAGAAGAGATTCAAGACTAGAGTTAAGTTTATTGAGAAGGGAAAGTTCCATGGGATTTCAATTGAATACATCAATGGCGGTAGCAGTGGCAGCAATATT ATTGGTGACCGGTTTGATCCTCAACTAGAGATAAAGGTAGATGGGGAACTAGCCATTCTTGTAAAGCATCTTCAGTGGAAGTTTAGAGGAAATGAGTCCA TCCACGTGAATAAAAGCACTAGAGTGGATGTTTATTGGGATGTGCATGACTGGCTCTTTGGTTCAGGCCCAAGGCAAGGTCTATTTATATTTAAGGCAGT TTCTGCATCATCATCATCATCTCCATCATTGTTGTTGACTCAAGAAGAAGAGAATTATGGCTCAGTACTAGAGAATGATAATACAGGTGGGTCATCCAGC TTTAGCTTGTTTTTGCATGCTTGGAAAGAAGAATAA
AA sequence Show only first row Show all	>Potri.010G047700.1 pacid=42799444 polypeptide=Potri.010G047700.1.p locus=Potri.010G047700 ID=Potri.010G047700.1.v4.1 annot-version=v4.1 MPDSLGIPACFSSGERQIVEPGANVTRSGQSVFMSVYRTKLAGLCRLIIITWCKNLLMHGLSISVQATNGSEHHQCKVELKPWNFWRKQGSKQFIVDGRA VDVVWDLKAAKFNGETEPQSDYYVAIVCEEEVVLLVGDLKKDAYRKTGCRPALIEPMLVSRKEHVFGKKRFKTRVKFIEKGKFHGISIEYINGGSSGSNI IGDRFDPQLEIKVDGELAILVKHLQWKFRGNESIHVNKSTRVDVYWDVHDWLFGSGPRQGLFIFKAVSASSSSSPSLLLTQEEENYGSVLENDNTGGSSS FSLFLHAWKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	0	1
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	2.00	0.9462	ERL1.2
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	2.00	0.9667
AT3G06070			unknown protein		Potri.008G204100 [exp]	3.00	0.9212
					Potri.002G252400 [exp]	4.00	0.9423
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	5.19	0.9445
AT3G10600		CAT7	cationic amino acid transporte...		Potri.008G017100 [exp]	8.30	0.8999
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	9.16	0.9253	Pt-ACR4.2
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	11.40	0.9139
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108000 [exp]	11.61	0.8845
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.005G138800 [exp]	13.03	0.9211

Compare expression of checked genes

Potri.010G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.