Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 504 / 8e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 496 / 1e-176 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 382 / 2e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 335 / 2e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 312 / 6e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT4G01130 303 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 275 / 8e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 275 / 2e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 274 / 2e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 251 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185500 [exp] 543 / 0 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 445 / 3e-156 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 442 / 5e-155 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 434 / 5e-152 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 424 / 6e-148 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 373 / 7e-128 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 311 / 9e-104 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 309 / 7e-103 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.014G094100 [exp] 295 / 3e-97 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003021 [exp] 423 / 1e-147 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011051 [exp] 379 / 1e-130 AT3G26430 340 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 369 / 5e-126 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 365 / 1e-124 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 357 / 5e-117 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 343 / 3e-116 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 304 / 6e-101 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 300 / 4e-99 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10000185 [exp] 291 / 1e-97 AT3G26430 266 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 290 / 3e-96 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G047900.2 pacid=42799752 polypeptide=Potri.010G047900.2.p locus=Potri.010G047900 ID=Potri.010G047900.2.v4.1 annot-version=v4.1 ATGGAGCTGCCCAGCTCAGTCTCTGTCGTCTCTATCTTTACTTTGTTACTTATTTCGACGGTGCAGTGGGTGGCGTTTGCCACTTCTCCATGTCATTTCC CAGCAATCTTTAACTTCGGAGACTCAAACTCAGACACCGGTGGATTGTCTGCAGTCTTTGGCCAAGCTCCTCCTCCGCATGGAGAGTCTTATTTCCACCA CCCCGCTGGACGTTACTGTGATGGCCGCCTCATCATCGACTTCATCGCGAAGAGCTTTGGACTACCATATCTAAGTGCTTACCTTGATTCAGTGGGTAGC AACTTCACTCATGGAACCAACTTTGCAACGGCAGGATCAACCATTAGACCCCAGAATTCAACTCTCCATCAAAGTGGCTTCAGTCCTATTTCCTTGGATG TTCAATGGAACGAATTCTATGATTTTCACCGCAGATCCCAGATTATCCGTAGCCAAGGTGGAGTTTATAAGAAATTGTTGCCGAAGGCTGAAGATTTCTC TCATGCTTTGTACACATTCGATATTGGTCAGAATGATCTTACCAGCGGTTATTTCTCGAACATGACCAGCAGTGAAGTTAAAGCATATGTCCCAGATGTG CTCGACCAGTTCAAAAACATTGTTTCGTACATATATGGTCAAGGAGGAAGGAACTTTTGGATTCACAATACAGGTCCATTTGGGTGTCTAGCTTATGTCT TGGAGCGCATTCCAATCTCAGCTGCGGAGGTGGATAAGAGTGGATGTGGGACTCCATTTAATGAAGTGGCTCAATATTTCAATCGTGGATTAAAGAAGGT TGTCTTCCAATTAAGGAAGGAATTACCACTGGCTGCAATAACATATGTTGATGTTTATTCAGTGAAGTACAAACTCATAAGCCAAGCAAGAAAGCACGGG TTTAATGAGTCGTTAAGAGCTTGTTGTGGGCATGGTGGAAAGTACAACTACAACAGGCAGCTTGGATGCGGAGCAAAGAGAACTGTGGGTGGCAGGGAAA TATTAGTGGGTAAATCCTGCAAAGATCCATCCGAATGGATTAGTTGGGATGGGGTGCACTACACACAAGCAGCTAACAAATGGATCTTCGACCGGATCGT GGACGGTTCCTTTTCCGATCCGCCAGTTCCATTGAAGATGGCATGCCAGAGGCAGCCAGTCCATTGA
AA sequence Show only first row Show all	>Potri.010G047900.2 pacid=42799752 polypeptide=Potri.010G047900.2.p locus=Potri.010G047900 ID=Potri.010G047900.2.v4.1 annot-version=v4.1 MELPSSVSVVSIFTLLLISTVQWVAFATSPCHFPAIFNFGDSNSDTGGLSAVFGQAPPPHGESYFHHPAGRYCDGRLIIDFIAKSFGLPYLSAYLDSVGS NFTHGTNFATAGSTIRPQNSTLHQSGFSPISLDVQWNEFYDFHRRSQIIRSQGGVYKKLLPKAEDFSHALYTFDIGQNDLTSGYFSNMTSSEVKAYVPDV LDQFKNIVSYIYGQGGRNFWIHNTGPFGCLAYVLERIPISAAEVDKSGCGTPFNEVAQYFNRGLKKVVFQLRKELPLAAITYVDVYSVKYKLISQARKHG FNESLRACCGHGGKYNYNRQLGCGAKRTVGGREILVGKSCKDPSEWISWDGVHYTQAANKWIFDRIVDGSFSDPPVPLKMACQRQPVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Potri.013G017900 [exp]	2.23	0.8316
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G099400 [exp]	3.87	0.8084
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	5.47	0.8084
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	6.92	0.8204
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	8.00	0.8266
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.004G010500 [exp]	11.00	0.7892
AT2G42110			unknown protein		Potri.016G045700 [exp]	11.31	0.8131
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	12.36	0.7997
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	12.96	0.8021	PtEXPA4,EXPA1.2
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	16.61	0.7861

Compare expression of checked genes

Potri.010G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.