Plant FIBer expression Database

EIF4.3 (Potri.010G048200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol EIF4.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26400 350 / 9e-115 EIF4B1 eukaryotic translation initiation factor 4B1 (.1)
AT1G13020 339 / 2e-110 EIF4B2 eukaryotic initiation factor 4B2 (.1)
AT4G38710 50 / 4e-06 glycine-rich protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G185400
[exp]
583 / 0 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1)
Potri.009G130200
[exp]
66 / 2e-11 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2)
Potri.004G169100
[exp]
49 / 5e-06 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Potri.014G123100
[exp]
47 / 2e-05 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1)
Potri.002G198700
[exp]
46 / 5e-05 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011412
[exp]
357 / 3e-117 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1)
Lus10036874
[exp]
338 / 4e-110 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1)
Lus10006224
[exp]
272 / 2e-82 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10006469
[exp]
167 / 2e-47 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1)
Lus10012166
[exp]
50 / 3e-06 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06273 eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence
>Potri.010G048200.1 pacid=42797595 polypeptide=Potri.010G048200.1.p locus=Potri.010G048200 ID=Potri.010G048200.1.v4.1 annot-version=v4.1
ATGTCAAAAAAGTGGGGGAAAATCGGTGCATGGGCAGCCGATTCCGAGCAAGCCGAAGAAGAGGAGCGCGCAGCCGCTGCAGCAGCCGTTTCTCAAAGCT
TCCCCAGCCTGAAAGAAGCTGCTGGAACCGCTAAGCCTAAAAAGAAGAAAATGTCTCTCAACGAATTTTATTCCACACCCAGCGGCGGCGGTGTTGAATC
CAAAGGCTTGACTCCTGACGAGATGTTCCGCCTCCCTACAGGTCCAAAAGAGCGTTCCGCTGAAGAAATGCAACATGGACACCTCGGTGGTGGATTTTCC
AATTACGGTCGAACCGGGCCGCCTCCTGGACGTATGCGTGATCGTGACAACACCGACGGGTCTTGGGGTGGTGGTGGTGGTAGAAGGCAATTTGGTGGTG
GTTTTGATGATGAACGAAGAGGCCAACCTCCTTCTAGGGTTTCTGATTACGATCAGCCTTCGCGTGCTGATGAGGTTGATAATTGGGCAATGGCGAAGAA
ACCGCAACCTTCTTTTGATTCTGGACGACAAAGTCGTTACAGTTCACTCGGAGGTGGCGGTGGTGACGGAGGTGGTTCTAGGGCTGATGAAGTTGATAAT
TGGGCAGTTGATAAAAAACCGTTACCTATTCGACCTTCTACTTTTGGTTCGGGTTTTCGTGATTCTGGACCGGAGCCTGATCGCTCGAGCAGAGGAGGAT
ATCGTGAGCCAGAGAGGGAGAGGCCTAGATTGGTTCTGGATCCACCAAGAGTTGAAGTTGTAGTTAACGAGCCTGTAAAAACAAACAGGTCTAATCCATT
TGGGACAGCGAGGCCGAGAGAAGATGTGTTGGCAGAGAAAGGATTGGATTGGAAGAAGCTGGAGATGGAAATGGAAGCTAAGAAGAACTCGAGCTTACAA
TCTAGCAGGCCAACTAGTGCACATTCTAGCAGACCTTCTAGTGCCCAATCGAATAGGTCTGAAGGGCCAGGGCTGCTGCACCAAGGGTTTGAGAATGTGG
CTGCGAAGCCGAGGCCGAGGGTGAATCCTTTTGGAGAGGCAAAGCCCAGGGAACTGTTGTTGCAGGAAAGAGGTCAAGATTGGATAAAGATTGACCGTGA
GTTGGAGCATCGTGGGGTAGATAGGCCTGAAACTGAAGAGGAAAAGTTATTGAAAGAACAAATAGAGCATTTGAAGACGGAGCTTGAGAAAGCGACAAAA
GTGAATCAGGAACCTCAACAAGTTTCTGTTGATGACCTACCCAGTTTAAGGGAGATGATAAATGAGAAAGAAAGGGAATTAGAAATATTGGTCCGTGATT
TGGATGACAAAGTTCGATTTGGACCAAAAGCCATTGAAAGGCCAGGTTCTGGGGCAGGCAGGTCTCCTGGGTTTTCAGAGAGACCTCCTTCGCGACCTGG
GTCATTTGACGAGTCGAGAAGTATGGAGTTCATGGATAGGCCTCGATCTCGTGGCAAGCCAGATATTTGGGCAAGGCCTGCTGACGAGCAAAGATCATTT
CAAGGTGGCAGGGAAAGAGGATTTCTGGGTAGCAGAGATTTTGACAGGCAAAGGACGGATAGGTGGTGA
AA sequence
>Potri.010G048200.1 pacid=42797595 polypeptide=Potri.010G048200.1.p locus=Potri.010G048200 ID=Potri.010G048200.1.v4.1 annot-version=v4.1
MSKKWGKIGAWAADSEQAEEEERAAAAAAVSQSFPSLKEAAGTAKPKKKKMSLNEFYSTPSGGGVESKGLTPDEMFRLPTGPKERSAEEMQHGHLGGGFS
NYGRTGPPPGRMRDRDNTDGSWGGGGGRRQFGGGFDDERRGQPPSRVSDYDQPSRADEVDNWAMAKKPQPSFDSGRQSRYSSLGGGGGDGGGSRADEVDN
WAVDKKPLPIRPSTFGSGFRDSGPEPDRSSRGGYREPERERPRLVLDPPRVEVVVNEPVKTNRSNPFGTARPREDVLAEKGLDWKKLEMEMEAKKNSSLQ
SSRPTSAHSSRPSSAQSNRSEGPGLLHQGFENVAAKPRPRVNPFGEAKPRELLLQERGQDWIKIDRELEHRGVDRPETEEEKLLKEQIEHLKTELEKATK
VNQEPQQVSVDDLPSLREMINEKERELEILVRDLDDKVRFGPKAIERPGSGAGRSPGFSERPPSRPGSFDESRSMEFMDRPRSRGKPDIWARPADEQRSF
QGGRERGFLGSRDFDRQRTDRW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.010G048200
[exp]
0 1 EIF4.3
AT3G26600 ARO4 armadillo repeat only 4 (.1) Potri.015G082800
[exp]
5.74 0.7622
AT4G02730 AtWDR5b human WDR5 \(WD40 repeat\) hom... Potri.002G051900
[exp]
7.07 0.7577 HMCA902
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.013G045000
[exp]
10.00 0.7887
AT5G57370 unknown protein Potri.018G091300
[exp]
10.24 0.7337
AT1G64890 Major facilitator superfamily ... Potri.019G043000
[exp]
10.63 0.6644
AT3G61140 EMB78, CSN1, CO... EMBRYO DEFECTIVE 78, COP9 SIGN... Potri.002G154500
[exp]
15.87 0.7208 EMB78.2
Potri.011G062950
[exp]
16.06 0.7715
AT3G56110 PRA1.B1 prenylated RAB acceptor 1.B1 (... Potri.008G074033
[exp]
17.43 0.7604
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.008G185400
[exp]
18.16 0.7504
AT1G01350 C3HZnF Zinc finger (CCCH-type/C3HC4-t... Potri.014G097300
[exp]
30.33 0.7513

Potri.010G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.