Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26380 814 / 0 Melibiase family protein (.1) AT5G08380 82 / 1e-16 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 81 / 7e-16 Melibiase family protein (.1.2) AT5G08370 76 / 2e-14 ATAGAL2 alpha-galactosidase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185300 [exp] 1032 / 0 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 1009 / 0 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G118200 [exp] 91 / 2e-19 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.004G038100 [exp] 89 / 1e-18 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 84 / 7e-17 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 84 / 9e-17 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.010G255200 [exp] 81 / 4e-16 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006226 [exp] 775 / 0 AT3G26380 753 / 0.0 Melibiase family protein (.1) Lus10036875 [exp] 583 / 0 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10011407 [exp] 448 / 3e-152 AT3G26380 476 / 3e-163 Melibiase family protein (.1) Lus10006467 [exp] 406 / 8e-137 AT3G26380 455 / 4e-156 Melibiase family protein (.1) Lus10018260 [exp] 93 / 6e-20 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 89 / 2e-18 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 85 / 2e-17 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 85 / 3e-17 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 83 / 1e-16 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 83 / 1e-16 AT3G56310 646 / 0.0 Melibiase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF16499 [poplar] [flax] Melibiase_2 Alpha galactosidase A
Representative CDS sequence Show only first row Show all	>Potri.010G048300.1 pacid=42798350 polypeptide=Potri.010G048300.1.p locus=Potri.010G048300 ID=Potri.010G048300.1.v4.1 annot-version=v4.1 ATGAGGATCCAACTGCTGAGCTCTCTGTTTCTCTTCTCCTTCAGTTCTTATCGTTACAGGGTATCATCTCAACCTGAGCACGCTAGCTTCCCTCCTCGAG GTTGGAACTCTTACGATTCCTTTGACTGGATTCTATCTGAAGTAGACTTCTTGCAAAGTGCCGAAAAGATATCTCAGCGTCTACAGCCTTATGGATATGA GTATGCAGTTATAGATTACCTGTGGTATAGGAAGAACGTTCCAGGTGCTTACCCAAATTCTCTTGGATTTGATGTAATTGATGAATGGGGGAGGTTGATC CCTGATCCAGATAGGTGGCCCTCATCTGAAGATGGGAAAGGGTTCACTGAAGTAGCCCAGAAAGTACAGAGCGTGGGTTTGAAGCTTGGGATTCATGTTA TGAGAGGATTAAGTAGACAGGCATATGATGCGAACACCCCCATCTTGGATACTACCACGGGACGTGCTTATGAAGAGTCTGGACGACTGTGGCGAGCAAA AGACATAGGGATCACGGAGAGGGCTTGTGGATGGATGCCACATGGTTTCATGAGTGTAAATACTAAGTTGGGAGCAGGAAGAGCCTTCTTGAGGTCACTT TATGAACAGTATGCTGAGTGGGGTGTTGATTTTGTGAAACATGATTGTGTATTTGGTAATGACTTGGATGTAGATGAAATAACATTTGTGTCAGAGGTTC TGCAAAAGCTCAGTCGTCCCATTCTGTATTCTGTGTCTCCGGGAGTTATCCCGACACCAGTCATGGAGAAAGATATAAGTGGGTTAGTCAACATGTACAG GGTCACAGGTGATGATTGGGATACATGGGGAGATGTTGCAGCTCATTTTGATGTTTCAAGGGACTTTGCTGCTGCTAATAAGATTGGTGCGAAGGGCTTG CTGGGGAGGTCATGGCCTGACTTGGATATGCTGCCCATAGGATGGCTTACAGATCCTGGTTCTGGCAGAGGACCATACAGAATGAGTAACCTTAATCTAG ATGAGCAGAAAACCCAGATGACTTTGTGGGCAATGGCCAGATCCCCTATCATGTTTGGAGGAGATGTTAGAAGGCTTGATGAGACCACATCTAATTTGAT CACCAATCCCTTCATTCTGGAAATAAATTCTTTTAGCACGAACAATATGGAGTTTCCATTTGTTACTGGCACAAAGGTTTCTGCACATAAGACCACGAAT CACAGCCGAAGATTGAGAAGAAGTTTGAAGGAAGTTGGCACATCACATACACAGTTTCTGGGTTTCACTAGCTGTAACCATCCCAAAGTTAACGGTTGGT CAATTAAAGCACTTGACCAAGATCTTGACCAGATATGCTGGAAAGAGAGCATGAGAAGCCATGAACCTTTATGCCTATACAAGCGAATTTTGACTTCTGA TGGACGGTTAATTTCCAATCAAGGAGGGTTCCATTTATTAGCTAGTCATGAAATGGAGTTTTGTTTGGATGCATCTCCAAGAAAGAAGCGTACTTCAAAA GAATTTAACAGTGGTTCCTTCTCCCCTTGCAGATCAGATGCCAACCAGATGTGGGAGTTGAGCAATAATGGATCCCTTATCAGCAGCTATTCTGGTCTCT GTGTAACTGTGAAATCAATTGACGCTAATGTTGGTAACAGCGGAGGAGTTCGCTCTTGGATTGCTACTGGTAGAAAAGGAGAGATTTATGTTGCACTTTT CAATCTGAACTCAGAGAAGACAGTAATATCAGCAACGATATCAGACCTGACTAAGGCACTTCCTGGGAAAAACTTGAATGCGACGTCATGTTTCGGCAGA GAAGTTTGGAGTGGAAAAGATTTTGGAGAAATAAAAGATTCAATATCAATGGAGGTAGAGATGCATGGCTGTGCATTGTTTGTCCTCAACTGTCCCTAG
AA sequence Show only first row Show all	>Potri.010G048300.1 pacid=42798350 polypeptide=Potri.010G048300.1.p locus=Potri.010G048300 ID=Potri.010G048300.1.v4.1 annot-version=v4.1 MRIQLLSSLFLFSFSSYRYRVSSQPEHASFPPRGWNSYDSFDWILSEVDFLQSAEKISQRLQPYGYEYAVIDYLWYRKNVPGAYPNSLGFDVIDEWGRLI PDPDRWPSSEDGKGFTEVAQKVQSVGLKLGIHVMRGLSRQAYDANTPILDTTTGRAYEESGRLWRAKDIGITERACGWMPHGFMSVNTKLGAGRAFLRSL YEQYAEWGVDFVKHDCVFGNDLDVDEITFVSEVLQKLSRPILYSVSPGVIPTPVMEKDISGLVNMYRVTGDDWDTWGDVAAHFDVSRDFAAANKIGAKGL LGRSWPDLDMLPIGWLTDPGSGRGPYRMSNLNLDEQKTQMTLWAMARSPIMFGGDVRRLDETTSNLITNPFILEINSFSTNNMEFPFVTGTKVSAHKTTN HSRRLRRSLKEVGTSHTQFLGFTSCNHPKVNGWSIKALDQDLDQICWKESMRSHEPLCLYKRILTSDGRLISNQGGFHLLASHEMEFCLDASPRKKRTSK EFNSGSFSPCRSDANQMWELSNNGSLISSYSGLCVTVKSIDANVGNSGGVRSWIATGRKGEIYVALFNLNSEKTVISATISDLTKALPGKNLNATSCFGR EVWSGKDFGEIKDSISMEVEMHGCALFVLNCP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26380			Melibiase family protein (.1)		Potri.010G048300 [exp]	0	1
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.001G249200 [exp]	2.64	0.9588
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	5.47	0.9506
AT1G52190			Major facilitator superfamily ...		Potri.018G040301 [exp]	7.34	0.9305
AT1G62760			Plant invertase/pectin methyle...		Potri.001G119300 [exp]	9.79	0.9474
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	10.58	0.9449
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	11.57	0.9545	RPOD1.1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	13.71	0.9498
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	19.44	0.9379
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	19.49	0.9376
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	22.36	0.9296

Compare expression of checked genes

Potri.010G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.