Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26370 893 / 0 O-fucosyltransferase family protein (.1) AT4G24530 325 / 4e-105 O-fucosyltransferase family protein (.1) AT2G01480 323 / 1e-103 O-fucosyltransferase family protein (.1) AT5G65470 318 / 9e-103 O-fucosyltransferase family protein (.1) AT1G14970 309 / 1e-98 O-fucosyltransferase family protein (.1) AT4G38390 298 / 4e-94 RHS17 root hair specific 17 (.1) AT2G37980 299 / 8e-94 O-fucosyltransferase family protein (.1) AT1G38065 291 / 9e-93 O-fucosyltransferase family protein (.1) AT1G29200 289 / 1e-91 O-fucosyltransferase family protein (.1.2.3) AT1G38131 292 / 2e-91 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185200 [exp] 1029 / 0 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 345 / 4e-112 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 329 / 6e-106 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 322 / 3e-104 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 321 / 2e-103 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 310 / 2e-98 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 308 / 2e-97 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 304 / 1e-96 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 305 / 2e-96 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036875 [exp] 928 / 0 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10006227 [exp] 794 / 0 AT3G26370 786 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 323 / 3e-104 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 323 / 1e-103 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 322 / 9e-103 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 317 / 4e-101 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 314 / 8e-101 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 311 / 1e-99 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 308 / 1e-99 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 310 / 4e-99 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G048500.2 pacid=42797711 polypeptide=Potri.010G048500.2.p locus=Potri.010G048500 ID=Potri.010G048500.2.v4.1 annot-version=v4.1 ATGGCGGAGCTGAGGCACTCGAGCTCGGTGGGAGCTCGAGCCTCTTCGTCACCAATGAAGCGTGACGAGGACGCCTCACCTCTCATTCACGGTACTACCC ACGATGACGATCACCGTCATCACTTTTCCAGAGATCGTGACCGTTCTTTTTGGTCTTTTCTCAGTGACGATCCTAGGGTTTTTTCTCTTCTCAACTCCAA GATCTCGTTATTCTTGGTTGCTGTTTTTGCTATTGTTGGATTGATCTCCGCTTTCTCCATCTTTAATCGACTGAATGCCCCATACCTGTGTAAGAAAGAT GGCATTGTTCTTCACTGTCCGCATGTCAACGAAGCTCCTTCGCTTTGGGAAAATCCTTACTCTGCCACAACCTCATGGAAGCCTTGTGCTGAGCGCCGTG ATAATGGGATATCAGATCTTCCTCCCGAAAATGAAACAAATGGTTATATATTTATCCATGCAGAGGGCGGTTTGAATCAGCAAAGGATTGCTATATGCAA TGCTGTAGCAGTGGCCAAAATAATGAATGCCACCCTTATTTTGCCTGTTCTGAAGCAGGACCAGATTTGGAAAGACCAAACGAAATTTGAAGACATTTTT GATGTTGATCATTTCATTGACTATTTAAAGTATGATGTACGAATTGTTCGTGATATACCTGAGTGGTTTACTGACAAATCAGAGTTATTCACAAGTATAA GACGGACAGTGAAAAACATTCCAAAATATGCACCTGCTCAATTCTACATAGACAATGTACTGCCTCGAATCAAGGAAAAGAAGATAATGGCCCTGAAGCC TTTTGTTGATCGGCTTGGATATGATAATGTTCCTCCAGAAATCAACAGGCTAAGGTGCAGGGTGAATTATCATGCTCTGAAATTTCTTCCTGAGATAGAG GAAATGTCTGATTTGTTGGTATCAAGGATGCGAAACCGCACAGGAGTTTCAAATCCATATATGGCTCTTCATCTTAGATTTGAAAAGGGAATGGTAGGTC TATCATTCTGTGATTTTGTGGGGACAAGGGATGAGAAAGCTAGAATGGGAGAATATAGAAAAAAAGAGTGGCCCCGACGATATAAGAACGGTTCCCATCT ATGGCAGTTGGCCCTGCAAAAACGGAAGGAAGGAAGGTGCCCTCTTGAACCCGGGGAAGTAGCTGTGATTCTTCGGGCAATGGGATATCCTAAGGAAACT CAGATTTATGTAGCTTCTGGCCAGGTTTATGGTGGACAAAACCGAATGGCTCCACTGAAGAACATGTTCCCAAGCCTGGTAACAAAGGAAGAGTTGGCAA CCAAAGAGGAGTTAGATGGTTTCAGGAAGCATGTGACAAGTTTGGCAGCTCTCGACTTCTTGGTTTGCCTGAAGTCTGACGTGTTTGTGATGACCCATGG AGGCAACTTTGCTAAATTGATTATTGGGGCCCGTCGGTACACGGGTCATCTTCACAAATCCATAAAACCAGACAAGGGGCTGATGTCCAAATCTTTTGGA GACCCATACATGGGCTGGGCAACTTTTGTAGAGGATGTGATTGTCACTCACCAAACACGAACTGGATTGCCAGAGGAGACCTTCCCTAATTATGACCTGT GGGAAAACCCTCTGACTCCTTGTATGTGTAGAGCCTGA
AA sequence Show only first row Show all	>Potri.010G048500.2 pacid=42797711 polypeptide=Potri.010G048500.2.p locus=Potri.010G048500 ID=Potri.010G048500.2.v4.1 annot-version=v4.1 MAELRHSSSVGARASSSPMKRDEDASPLIHGTTHDDDHRHHFSRDRDRSFWSFLSDDPRVFSLLNSKISLFLVAVFAIVGLISAFSIFNRLNAPYLCKKD GIVLHCPHVNEAPSLWENPYSATTSWKPCAERRDNGISDLPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIF DVDHFIDYLKYDVRIVRDIPEWFTDKSELFTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIE EMSDLLVSRMRNRTGVSNPYMALHLRFEKGMVGLSFCDFVGTRDEKARMGEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKET QIYVASGQVYGGQNRMAPLKNMFPSLVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYTGHLHKSIKPDKGLMSKSFG DPYMGWATFVEDVIVTHQTRTGLPEETFPNYDLWENPLTPCMCRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26370			O-fucosyltransferase family pr...		Potri.010G048500 [exp]	0	1
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.013G108400 [exp]	7.74	0.7724
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075700 [exp]	9.21	0.7557
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	12.84	0.7883
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	17.66	0.7567
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.019G053300 [exp]	22.91	0.7577
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.001G032800 [exp]	23.43	0.6839
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	26.49	0.6993
AT1G52310			protein kinase family protein ...		Potri.001G160300 [exp]	28.98	0.6840
					Potri.003G156650 [exp]	30.00	0.6729
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	30.51	0.7514

Compare expression of checked genes

Potri.010G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.