Plant FIBer expression Database

Potri.010G048700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13030 195 / 8e-54 sphere organelles protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G185100
[exp]
926 / 0 AT1G13030 199 / 1e-55 sphere organelles protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006228
[exp]
222 / 2e-63 AT1G13030 320 / 4e-101 sphere organelles protein-related (.1)
Lus10036876
[exp]
212 / 8e-60 AT1G13030 323 / 4e-102 sphere organelles protein-related (.1)
Lus10011406
[exp]
134 / 3e-32 AT3G26350 209 / 5e-60 unknown protein
Lus10006465
[exp]
103 / 2e-24 AT1G13030 91 / 3e-20 sphere organelles protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15862 Coilin_N Coilin N-terminus
Representative CDS sequence
>Potri.010G048700.2 pacid=42798860 polypeptide=Potri.010G048700.2.p locus=Potri.010G048700 ID=Potri.010G048700.2.v4.1 annot-version=v4.1
ATGGAGACGGTCAGGCTTCGCTTAGTGCTCGACAACGCTTTGACTACGACGACGGAAGGACTTAGAAAGTGCTGGATTCTATTAAAACCCCAACACAAAA
CCATCTCCGATCTCTCCTCCCATATCCTCCAGGTGTTCGACCTCCACAATGCATGCCCCAGCGGCCTCTTCCTCTCTATGGAAGGGTTTGTATTACCGCC
TTTTGAGTCCACTTGTATTTTGAATGATAAAGATATTGTCAGAGTGATAAAGAAAGATGGCACGGCTACTGAAATTATCAAGATAGATGATGGGCTGAAT
GATTCGTTGAACGTGGTGGAAATAATTGACAAGCCACCGGTAACCACAGGCACGAATCTGCTTGCGAATGAGGAATTTGAAAAGGAATCTGACAGCTATG
AAAGTGAACAAGAGGTGGATGTTGCTGCAGAGGTGGAGGATGTAGAAAATAGTCCAGAAGTGAAAGCAGTTTCGAAGAAGAGAAAGGCATCAAAGGATGC
TCACAGCCCAAAGAGGAAGAAAACCAAATCTGCTAGTGCTAAAAAATGCCTAGAGGTTTCAGAAAATGTAGTGACTGATGTCTCTGCAGAGCAGAATGGC
ACTTTGGGCATTGTTGATGTTGATGAAAGAAGTGGCAAGAGTAGGAAAGCTATGCGTGACACTAAGAAGAGGAAGAAAACTAAATCTGCTAGTGCTGAAA
AATGTATGGAAGTTTCAGAAAATGTTGTGACAAGTGTCTGCGCAGGGCAGAATGGCACTTTGAGCTTTTTTAAAGCAGATGAAAGAAGTAGCAAGAGTAC
AGAAGCTACTATTAATGCACAGAAGTCTTGCCAGCCTGAACAAAATGGAAATGGGAGTGTGGATGCCTCACATATACTTTCTGGATCTAAAAAGTGCCCC
AGTAGAAGTGCTAGGCGTAAAAAGGCCAAGAGGCATTGGTTGAAGGAACAACTCAAAGCTGAAAAGAAAGCACAAAATAAGAGGGAGTTGCTTTTGAATA
TCAATCAGCAATCATCTGAAAAGGATAATCAGAATGTTTCTGGAGAATCACCTGAACCAGGAAGTCAGAAAACCTCTGAAGAAAAACTCAGGGAAGACAA
CCAATTGGGAGAGCGAGATAGTGATGTAGAGGGTGATGTTGTTCCCGTAGTGATCAGGCCGGGACACATTCGTTTTGAGCCGCTCAAGAAAGGTCTAATG
CTCGGGGATTCTGATCATGCTGTGCCGCAAAATCACGTTTCTATTGAAAGATTTCAGTGGAATGGAATAACAAGCAAAAAGAAGGGCCAAAAGTGGGGTA
AAGAGAAAGTGGTGTCATGTAAAAGGAATGATTATAACAATTTCAAGAAAGAGTCTTACAGCAGTCTTACTATTGAAGAACAGACACCTGTATATGATTG
CACCAACTTTGAAGAGTTTCCACTCTATGCTAGCTTGCCAAAGGAAGGTGATGTAATTGCTTATCGTTTGGTTGAGCTGTCATCATCCTGGACCCCTGAG
CTCTCATCATACCGTGTTGGAAAGGTATCAAAATATGATCTTGAATCCAATATAGTTATGCTGGCCCAAGTACCAGAATATCCAGTAATTCCTGAGAAGA
TAGATGATGAGGCATCCGATGCACTACCAGAAACATCCCCTTATCAGGACGATGGTTCCTTAGAGATAAAGTTTTCGGCACTTTTTGAAGTTCGCCTTGT
TCACCATGGCAATATAAAGTCAGCAAAATCAGTTACTGGTGGATCTAATGAAGTCCATGTAAGGGATCAAGATTCTGGAACTGGTTTCAAGCTGAACAAC
AACCACGAAGCTGGTACTTCTGCTCAAGAAAACGGAAAACATAATCCATGGGAAGAAACTAACCAGGCTTTGACAGCACAGAAGGCATGGCTATCTCAGG
AAGATAGCTGTAAAAAACCTGAGAGTTCAGGCAGGAGCCCATGGTCCTATAAGGCCTTGAGGGGCAGCGCATTGGGTCCAACAGTTGCTTTATTAAGAGC
ACAAAATGAATTATGA
AA sequence
>Potri.010G048700.2 pacid=42798860 polypeptide=Potri.010G048700.2.p locus=Potri.010G048700 ID=Potri.010G048700.2.v4.1 annot-version=v4.1
METVRLRLVLDNALTTTTEGLRKCWILLKPQHKTISDLSSHILQVFDLHNACPSGLFLSMEGFVLPPFESTCILNDKDIVRVIKKDGTATEIIKIDDGLN
DSLNVVEIIDKPPVTTGTNLLANEEFEKESDSYESEQEVDVAAEVEDVENSPEVKAVSKKRKASKDAHSPKRKKTKSASAKKCLEVSENVVTDVSAEQNG
TLGIVDVDERSGKSRKAMRDTKKRKKTKSASAEKCMEVSENVVTSVCAGQNGTLSFFKADERSSKSTEATINAQKSCQPEQNGNGSVDASHILSGSKKCP
SRSARRKKAKRHWLKEQLKAEKKAQNKRELLLNINQQSSEKDNQNVSGESPEPGSQKTSEEKLREDNQLGERDSDVEGDVVPVVIRPGHIRFEPLKKGLM
LGDSDHAVPQNHVSIERFQWNGITSKKKGQKWGKEKVVSCKRNDYNNFKKESYSSLTIEEQTPVYDCTNFEEFPLYASLPKEGDVIAYRLVELSSSWTPE
LSSYRVGKVSKYDLESNIVMLAQVPEYPVIPEKIDDEASDALPETSPYQDDGSLEIKFSALFEVRLVHHGNIKSAKSVTGGSNEVHVRDQDSGTGFKLNN
NHEAGTSAQENGKHNPWEETNQALTAQKAWLSQEDSCKKPESSGRSPWSYKALRGSALGPTVALLRAQNEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13030 sphere organelles protein-rela... Potri.010G048700
[exp]
0 1
AT3G63370 OTP86 ORGANELLE TRANSCRIPT PROCESSIN... Potri.005G215500
[exp]
8.00 0.7465
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
8.36 0.6975 Pt-HUA1.1
AT1G07615 GTP-binding protein Obg/CgtA (... Potri.001G239600
[exp]
12.24 0.7099
AT3G52210 S-adenosyl-L-methionine-depend... Potri.010G233100
[exp]
12.56 0.7461
AT5G16260 ELF9 EARLY FLOWERING 9, RNA binding... Potri.010G179000
[exp]
12.64 0.6832
Potri.001G247100
[exp]
14.07 0.7461
AT5G04895 DEA(D/H)-box RNA helicase fami... Potri.010G246000
[exp]
18.00 0.6850
AT1G80480 PTAC17 plastid transcriptionally acti... Potri.001G133500
[exp]
20.68 0.7108
AT3G49430 SRP34A, SR34a, ... Serine/Arginine-Rich Protein S... Potri.015G004600
[exp]
25.29 0.6601
AT5G26040 HDA2 histone deacetylase 2 (.1.2) Potri.006G230300
[exp]
25.63 0.6028 HDA910

Potri.010G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.