Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26350 189 / 8e-57 unknown protein AT1G13050 179 / 3e-53 unknown protein AT4G26490 141 / 2e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 127 / 5e-34 unknown protein AT5G53730 48 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 41 / 0.0005 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184500 [exp] 190 / 2e-58 AT1G13050 53 / 3e-08 unknown protein Potri.011G165500 [exp] 168 / 1e-49 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 157 / 2e-45 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 44 / 6e-05 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 44 / 0.0001 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 41 / 0.0005 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011406 [exp] 247 / 1e-73 AT3G26350 209 / 5e-60 unknown protein Lus10006464 [exp] 234 / 1e-72 AT3G26350 208 / 2e-63 unknown protein Lus10032906 [exp] 138 / 3e-38 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015606 [exp] 136 / 2e-37 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.010G049000.1 pacid=42798538 polypeptide=Potri.010G049000.1.p locus=Potri.010G049000 ID=Potri.010G049000.1.v4.1 annot-version=v4.1 ATGTCTTGGCATCCAGAAACAAACCCTCATTTTATTAAAACACCGCTGCAACAGCGTGAAGGCCAACCCTCCCAGACACCACCTAGTCACGGGGAGCCGT CGTCAGGTCGTCAAGATCAACAAAACCAGCCACCTCAGGGCCCACTGGTGACTCGACTAAGGAGCAAAGGCCAAGGTTCCAAGAAGAACGGTGCACGGGT GGTTAAAACAGAGCATGAAGGCCAATTGCGCAGTCCATGGATCATACCAGCACAACAGCATCCGGGCCACCATCCCGATTCACACTTTCCACTTCATGAC AACCAAGTCCAAAGTCCACCAACGCAGACACCGCAGCATCAAGACCACCCACATTTTCCATCGCATAATGTGACTTTCCAGAGCCCATGGGTTCCACCAC TGCCCCGTGGCCCTCACCCCCAGCCACATGGCCCCAAGCATGATAGTGAACCTCATGTACCACCGAGGAATCATGATCAAGACCGTGGTCCTAGTCCTAG GGTGACACTTCCACAGCATCAAGAACGAAACCCCCGGCAGCCCCCCGGTCTAGTAGACCGACCAGCACAGTTTTCTGGGTTGCCGAAACCTGGTGGAACC AAACCCTTAATATGGTTAGGTGCAGTTTTCTGCGCAATTCTTTGGATCGTAATATTCCTAGGAGGCCTAATTGTCCTTATAGTCTACCTGGTATATCGCC CACGTAGTCCACGGTTTGATGTGTCCAGTGCCTCCTTAAACATGGCCTACATCGATGCAGGCTCTCTACTCAATGCTGATCTAACTGTGCTAGCAAACTT CACCAATCCAAACAAGAAAGTGAGCGTGGACTTCAGTTACATGATCATTGATCTATACTACGGAAGCACTCTTATCGCTACCCAATATATAGAACCGTTT TCAGCAGAGAGGGCTGAGTCGAGGTTCGTAAATGTTCATATGGTTACAAGTCAGGTTCGGCTTCCCGTCCTGGAAAGCGCACGGCTCCAGGAGCAGATTA GTAAAAATGGAGCCATATTTGACGTGAAAGGAGTATTTCGGGTGCGATCTAAACTGGGGACTTTACTCAAGTACTCGTATAGGCTGTATGGTCACTGCAC TATCTTGGTGACAGCTCCTCCCAGTGGAGTCCTTCGAGCTACCAAGTGCAGAACAAAACGATGA
AA sequence Show only first row Show all	>Potri.010G049000.1 pacid=42798538 polypeptide=Potri.010G049000.1.p locus=Potri.010G049000 ID=Potri.010G049000.1.v4.1 annot-version=v4.1 MSWHPETNPHFIKTPLQQREGQPSQTPPSHGEPSSGRQDQQNQPPQGPLVTRLRSKGQGSKKNGARVVKTEHEGQLRSPWIIPAQQHPGHHPDSHFPLHD NQVQSPPTQTPQHQDHPHFPSHNVTFQSPWVPPLPRGPHPQPHGPKHDSEPHVPPRNHDQDRGPSPRVTLPQHQERNPRQPPGLVDRPAQFSGLPKPGGT KPLIWLGAVFCAILWIVIFLGGLIVLIVYLVYRPRSPRFDVSSASLNMAYIDAGSLLNADLTVLANFTNPNKKVSVDFSYMIIDLYYGSTLIATQYIEPF SAERAESRFVNVHMVTSQVRLPVLESARLQEQISKNGAIFDVKGVFRVRSKLGTLLKYSYRLYGHCTILVTAPPSGVLRATKCRTKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26350			unknown protein		Potri.010G049000 [exp]	0	1
AT4G05430			Carbohydrate-binding X8 domain...		Potri.007G111000 [exp]	1.41	0.9764
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	1.73	0.9759
AT3G47180			RING/U-box superfamily protein...		Potri.002G080900 [exp]	2.82	0.9613
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.003G072000 [exp]	3.87	0.9562
					Potri.003G217500 [exp]	6.00	0.9559
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G030900 [exp]	6.32	0.9292
					Potri.003G151900 [exp]	8.60	0.8701
AT3G47180			RING/U-box superfamily protein...		Potri.005G180300 [exp]	10.39	0.9004
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129900 [exp]	13.49	0.9388
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.002G153600 [exp]	16.43	0.8585

Compare expression of checked genes

Potri.010G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.