Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26320 436 / 8e-150 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 429 / 2e-147 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 427 / 2e-146 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26290 420 / 1e-143 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26310 419 / 2e-143 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G57260 414 / 2e-141 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT2G02580 409 / 2e-139 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1) AT3G26180 400 / 6e-136 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT3G26170 397 / 1e-134 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1) AT1G13080 390 / 5e-132 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184900 [exp] 741 / 0 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 739 / 0 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 734 / 0 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025300 [exp] 380 / 6e-128 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 379 / 1e-127 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 377 / 2e-126 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 362 / 1e-120 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 361 / 2e-120 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 360 / 5e-120 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030189 [exp] 516 / 0 AT5G57260 487 / 3e-169 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10023140 [exp] 353 / 1e-117 AT3G26300 457 / 8e-158 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033172 [exp] 347 / 6e-115 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 344 / 6e-114 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 342 / 3e-113 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 337 / 4e-111 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10016601 [exp] 335 / 2e-110 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034502 [exp] 333 / 2e-110 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 333 / 7e-110 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 327 / 3e-107 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G049200.2 pacid=42799987 polypeptide=Potri.010G049250.1.p locus=Potri.010G049200 ID=Potri.010G049200.2.v4.1 annot-version=v4.1 ATGGCTCTCTATGCTGTGCCTTTGTGGCTTCCTCTTATTTTACTTCTGCCTCTACTGCTTTTGTTTATGAAAAGGATGAAAGATGCGGGACAAAGCAATT TGCACCAGCTTAGTTCACTGCCTCACCAATCTATGTGGCATCTCTCCAAGAAATATGGCCCTGTCATGCTCCTTCGACTTGGTCAAATACCAACTGTTGT AATCTCCTCCGCTGAGGCAGCAAGGGAGGTGTTAAAAGTTCATGATCTTGCCTTTTGCAGTAGACCTTTGTTATCTGGCGCTGGCAGACTCACGTACAAT TATCTAGACATTGCATTTTCACCATATAGCGATCACTGGAGAAACATGAGAAAAATTGTTACTTTGGAGCTCTTCAGCTTGAAAAGGGTGCAATCTTTCC GATTCATTAGGGAAGAGGAAGTTGGCTTTCTGGTCAATTCTCTCTCCGAGTCATCAGCTCTAGCAGCACCAGTTGATCTTACTCAGAAGGTATATGCTCT GGTTGCGAATATAACATTCAGGGTGGCTTATGGGTTCGATTATCGAGGGACTACCTTTGATCGAGATAGATTCCATGAAGTGGTTCATGACACCGAGGCT GTGGTGGGAAGCATCTCAGCAGATGAATACTTAGATACTTTCTTCCAGCATGTAATTGATAATCATCTTAAACCTGGAAGGATAAAGGATCACGATGACA TGATAGATGTTCTGCTGAGAATAGAGAAGGAACAAACTGAGCTGGGTGCATCTCAGTTTACGAGTGATAATATTAAGGCAGTCCTCCTGAATTTATTTTT GGGCGGAGTAGACACTAGTTCACTTACGGTGAATTGGGCAATGGCAGAACTTGTCAGGAATCCAAGAGTGATGAAGAAAGTGCAGGATGAAGTGAGGAAA TGTGTTGGAAAGAAAGGAAGAGTTACTGAAGGGGATGTCGATCAACTTGAGTATCTCAGGATGGTAATAAAAGAAACTCTGAGACTGCACCCTCCTGCCC CTCTACTTCTCCCAAGAGAAACCATGTCTCACTGTATAGTCAGTGGCTACAATATCTATCCGAAGACGCTGGTCCATGTTAATGTCTGGGCAATTGGACG TGACCCCAAGTACTGGAGGGATCCTGAAGATTTTGAGTATTTGCCATTTGGATCTGGTCGAAGAATTTGTCCTGGAATTCATATGGGATCTATAACAGTA GAGATTATACTTTCAAATCTCTTGCATTGTTTTGATTGGATTTTGCCCCATGGGATGCAGAAGGAAGATATCAACATGGAAGAGAAAGCTGGTGTTAGCC TTGCTCCCTCTAAGAAGACACCTGTAATCCTCGTACCTGTCAACTACCTTCAGTGA
AA sequence Show only first row Show all	>Potri.010G049200.2 pacid=42799987 polypeptide=Potri.010G049250.1.p locus=Potri.010G049200 ID=Potri.010G049200.2.v4.1 annot-version=v4.1 MALYAVPLWLPLILLLPLLLLFMKRMKDAGQSNLHQLSSLPHQSMWHLSKKYGPVMLLRLGQIPTVVISSAEAAREVLKVHDLAFCSRPLLSGAGRLTYN YLDIAFSPYSDHWRNMRKIVTLELFSLKRVQSFRFIREEEVGFLVNSLSESSALAAPVDLTQKVYALVANITFRVAYGFDYRGTTFDRDRFHEVVHDTEA VVGSISADEYLDTFFQHVIDNHLKPGRIKDHDDMIDVLLRIEKEQTELGASQFTSDNIKAVLLNLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRK CVGKKGRVTEGDVDQLEYLRMVIKETLRLHPPAPLLLPRETMSHCIVSGYNIYPKTLVHVNVWAIGRDPKYWRDPEDFEYLPFGSGRRICPGIHMGSITV EIILSNLLHCFDWILPHGMQKEDINMEEKAGVSLAPSKKTPVILVPVNYLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.010G049200 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Potri.002G234000 [exp]	8.36	0.8077
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	9.00	0.8098
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	9.48	0.8135
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	13.63	0.8133
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	14.96	0.8107
AT4G36600			Late embryogenesis abundant (L...		Potri.007G024000 [exp]	16.12	0.7939
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	16.52	0.8055
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	17.49	0.7973
					Potri.017G035401 [exp]	17.94	0.8042
					Potri.001G444100 [exp]	19.26	0.8117

Compare expression of checked genes

Potri.010G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.