Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24560 642 / 0 unknown protein AT3G49055 70 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183800 [exp] 956 / 0 AT1G24560 691 / 0.0 unknown protein Potri.008G184600 [exp] 397 / 4e-134 AT1G24560 302 / 2e-97 unknown protein Potri.015G146100 [exp] 102 / 1e-22 AT3G49055 191 / 1e-54 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025844 [exp] 725 / 0 AT1G24560 750 / 0.0 unknown protein Lus10038257 [exp] 716 / 0 AT1G24560 736 / 0.0 unknown protein Lus10013022 [exp] 563 / 0 AT1G24560 624 / 0.0 unknown protein Lus10029143 [exp] 557 / 0 AT1G24560 613 / 0.0 unknown protein Lus10027489 [exp] 98 / 2e-21 AT3G49055 244 / 3e-75 unknown protein Lus10007123 [exp] 59 / 7e-11 AT1G24560 52 / 9e-10 unknown protein Lus10039244 [exp] 54 / 2e-08 AT3G49055 89 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G049400.4 pacid=42796811 polypeptide=Potri.010G049400.4.p locus=Potri.010G049400 ID=Potri.010G049400.4.v4.1 annot-version=v4.1 ATGGCGAACACCGTCGACGATGACGCCGATGCGGTGTTGAGCGATGTGGAAGGGGAAGATCCGGTGGAGATTGTAATAAAAAGTCCGAGTCAAGAAGATA TTTCGGTTGAGAAATTCCGTGAGCTCCTCGATCGCGAGCGAGCGGCACGGGAGGCAGCCGAGACTTCGAAATCGGAACTGCAAGTGTCATTTAATCGATT AAAAGCTCTCGCGCACGAAGCATTAAAAAAGCGAGACGAGTGCTCGAGGCAGAGAGACGAAGCGCTGAGAGAGAAAGAAGAGGCGTTGAAAGCTAACGAG AAATTATCGAATGAATTGATTCAAGTGAACGGATCAAAAGAGGAGATTGAGAAGAAATTCGATGATTTGCAATCGCAGATTGAGAATTCGAGGCATATGT TAGTTAGTGGAATTGATAAGATATCAGGGAAATTTAGTAATTTCAAGAATTTCGCAGCGGCAGGATTGCCTAGGTCGCAGAAATACAATGGATTGCAGGC GGTTGCGTTTGGAGTTATTAAGAGGACGAATGAGATTGTCGAGGAGCTTGTTAGGCAGATTGATGTCACTGCAAAATCTAGAAATGATGCTAGAGAACAA ATAGAGCAGAGGAATTACGAGATTGCCATTGAGGTTTCTCAGCTTGAGGCTACAATTAGTGGATTGAGAGATGAAGTTGCCAAGAAAACGACGTTGGTTG AGGATTTAGAGAAGAGTGTGGTCGAGAAAGAGGGGAAAGTATCGGAGATTGAGAGAGAGATGTTGGAGAGGAAGCATTTGGTGGAGAAGGAAGCATCGGG GTTGAGGGACTTGGTTGGTGAGTATGATGATAAGTTGAGAAATTTGGAGTCGAAGATGGAATCACATAGACTTTTGTTGTTTGATCAGTTGAATTTGGTG GCGAAAATTCATAACCGTCTTTATGATGTCATTAAGATAGTTGATAGCAATCATTTGGATTCCGAGGTGTCAGAGTCATTGTTTCTCCCCCAACAAACGG AAGTGGAGGAGAATATACGTGCTTCTTTAGCCGGGATGGAATCAATTTATGAGGTGAGTAGAATTGTTGCTGAAAAAACAAGGGATTTGGTAGAGGAGAA GAATCACGAAGAGAAGAATTTGAATGAAACAGTGGGTATATTAGTGAAGGAGAAAGAACATATCGGTTCTTTACTTAGGAGTGCCTTGTCGAAGAGGATT GAATTACACCCATCCTCCAAAACAAGTGAGTTGTTTCAAGTTGCTGAAAATGGTTTAAGAGAGGCTGGGATAGATTTCAAATTCAGTAAGGTGGTTGGGG ATGGTAAGGTATCTTATGATAAAGGCGGCTTGCCGGACACAGAGAGTGATGAAATATATACTCTGGCTGGTGCTTTGGAGAATATCGTCAAGGCATCTCA GCTTGAGATCATTGAGCTGCAGCATTCTGTGGAGGAACTAAGGGCAGAGTCAAGTTTACTTCAAGAGGATGTAGAGGTTCAAGCGAAGGAACTGAGCAAT AGAATGCGCAGGGTAGAAGAGCTTGAAGAGAAGGAGAGAGTGGCAAATGAAAGCGTTGAAGGACTTATGATGGACATTGCTGCTGCAGAAGAAGAAATTA CAAGGTGGAAAGTAGCAGCTGAGCAAGAGGCTGCTGCAGGCAGAGCTGTCGAACAAGAGTTTGCGGCTCAGTTGTCGGCAGTTAAGCAAGAACTTGAAGA GGCAAGGCAAGCCATGTTAGAATCAGAGAAGAAGTTAAAATTCAAAGAAGAAACAGCAACTGCTGCCATGGCAGCAAGAGAGGCTGCTGAGAAGTCATTG AGTTTGGCAGACATGAGGGCATCTAGGCTGAGGGATAGGATAGAGGAGCTCAGCCACCAGCTGGAAGAGTTGGAAACTCGAGAAGATTCGACGGGACGAA ATCGGCCTAGATATGTATGTTGGCCTTGGCAATGGCTTGGGCTGGACTTTGTAGGCCATCACAGACCTGAGACACAACAACAGGGTTCGAATGAAATGGA GCTTTCTGAACCCTTCTTATGA
AA sequence Show only first row Show all	>Potri.010G049400.4 pacid=42796811 polypeptide=Potri.010G049400.4.p locus=Potri.010G049400 ID=Potri.010G049400.4.v4.1 annot-version=v4.1 MANTVDDDADAVLSDVEGEDPVEIVIKSPSQEDISVEKFRELLDRERAAREAAETSKSELQVSFNRLKALAHEALKKRDECSRQRDEALREKEEALKANE KLSNELIQVNGSKEEIEKKFDDLQSQIENSRHMLVSGIDKISGKFSNFKNFAAAGLPRSQKYNGLQAVAFGVIKRTNEIVEELVRQIDVTAKSRNDAREQ IEQRNYEIAIEVSQLEATISGLRDEVAKKTTLVEDLEKSVVEKEGKVSEIEREMLERKHLVEKEASGLRDLVGEYDDKLRNLESKMESHRLLLFDQLNLV AKIHNRLYDVIKIVDSNHLDSEVSESLFLPQQTEVEENIRASLAGMESIYEVSRIVAEKTRDLVEEKNHEEKNLNETVGILVKEKEHIGSLLRSALSKRI ELHPSSKTSELFQVAENGLREAGIDFKFSKVVGDGKVSYDKGGLPDTESDEIYTLAGALENIVKASQLEIIELQHSVEELRAESSLLQEDVEVQAKELSN RMRRVEELEEKERVANESVEGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFAAQLSAVKQELEEARQAMLESEKKLKFKEETATAAMAAREAAEKSL SLADMRASRLRDRIEELSHQLEELETREDSTGRNRPRYVCWPWQWLGLDFVGHHRPETQQQGSNEMELSEPFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24560			unknown protein		Potri.010G049400 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	1.00	0.7982
AT1G47330			CBS domain-containing protein ...		Potri.014G196900 [exp]	1.41	0.7782
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	3.87	0.7162
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Potri.015G063100 [exp]	7.74	0.7214
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.007G109000 [exp]	25.61	0.7303
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.006G150600 [exp]	33.13	0.7301	CDA1.1
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	37.28	0.7289
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	40.24	0.6655
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	50.61	0.6822
AT5G02570			Histone superfamily protein (....		Potri.009G028001 [exp]	57.96	0.6388

Compare expression of checked genes

Potri.010G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.