Plant FIBer expression Database

Potri.010G049700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13130 679 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26130 643 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26140 613 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT5G17500 573 / 0 Glycosyl hydrolase superfamily protein (.1)
AT5G16700 484 / 1e-167 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G183400
[exp]
1006 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.010G049800
[exp]
758 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.001G097901
[exp]
372 / 6e-123 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011404
[exp]
705 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006462
[exp]
702 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006461
[exp]
696 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10011403
[exp]
696 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10024686
[exp]
370 / 7e-122 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10032312
[exp]
310 / 2e-99 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10005737
[exp]
62 / 6e-12 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.010G049700.2 pacid=42798103 polypeptide=Potri.010G049700.2.p locus=Potri.010G049700 ID=Potri.010G049700.2.v4.1 annot-version=v4.1
ATGGGGAGGCTTGTTTTCTTCTCATTTCTCTCCATCTTCTCTTTCCTTATAACATTCTCTGATGTGATGATACCACAAAAGCAAGTCATGGCACTCCCTC
TGTCAACTGACTCACGGTGGATCGTGGACGAAAACGGGCAAAGAGTGAAGCTGGCATGCGTGAATTGGGTATCACATCTTGAGGTCATGGTAGCCGAGGG
GCTTAGCAAGCAGCCCTTGGATGGTATCGCCAAGCGGATTTTGTCCATGGGGTTCAACTGTGTTAGACTCACTTGGCCAGTTTTCTTGGTAACCAATGAC
ACTCTGGGCTCCCTCACTGTAAGACAATCCCTTCAAAGCCATGGTCTCCTCGAATCAATATCTGGTATCCAGGCCAACAACCCCTCCATCATTGATCTCT
CCCTCCTTGACGTTTACCAGGCAGTGGTGTCTAGTCTTGGGAACAATAATGTGATGGTGATACTGGACAATCACATAAGCAAGCCTGGCTGGTGCTGCAG
TAATTTTGATGGCAATGGCTTCTTCGGTGACCAATATTTCGACCCGGATCTATGGATCACAGGCCTAACTAGAATGGCGAGCATGTTTAACGGTGTGCCT
AATGTGGTGGGCATGAGCTTGAGGAATGAGCTTCGAGGCCCCAAACAAAATGTCAATGATTGGTACAGGTACATGCAAAAAGGAGCTGAAGCAGTGCACT
CAGCGAACCCCGATGTTATTGTCATTCTATCGGGCCTGAATTATGACAAAGACTTGTCTTTCCTGCGCAATCGACCGATGAATCTAACATTTAGTGGTAA
AATAGTGTTCGAAGTACATTGGTATAGCTTTACAGATGGGGAGGCATGGAAAAATGGCAACTCGAACCAAGTGTGTGGAAGAGTGGTGGATAATATGATG
AGGGTATCTGGATTTTTGTTGGACCAAGGCTGGCCATTGTTTGTGAGTGAGTTTGGGGTGGATCAAAGAGGCACAAATGTTAATGATAATAGGTACTTGG
GATGCTTCCTTAGTGTTGCAGCTGAACTTGACTTGGACTGGGCTTTGTGGACACTAGTTGGAAGCTACTATTTGAGGCAAGGTGTTATAGGGATGAATGA
GTACTATGGAGTTATGAATTGGAATTGGTGTGAGGCTAGGAATTCAACATTCTTGCAGCAAATATCTGTCCTCCAATCTCCATTTCAAGGGCCAGGTTTA
TCAGAAGCTAATCCACATAAAGTGATTTTCCACCCATCAACGGGTCTTTGTGTTTTGAGGAAATCAATGTTTGAGCCACTAAGGTTAGGTCGTTGCACTG
AATCTGAAGCCTGGAACTATACACCTCAGAAGATACTGTCAGTGAAAGGGACATATTTCTGCTTACAAACAGATGACTTGGCCAAACCAGCAAAACTTGG
TATAATATGCACAGATTCTAATTCAAAATGGGAAACCATCTCGGATTCCAAAATGCACTTTTCATCTACCGCCGCTAATGGCATAGCCGTTTGCCTAGAT
GTAGATTCCAACAACACCATCGTGACAAATACTTGCAAATGTTTGAGTAAAGATAACGCATGCGACCCGGAAAGCCAATGGTTTAAATTAGTTAACAGCA
CAAGAAGTTCCACCATGACAAAACCTTTGTCTCGGATGAATTCAATCCTTAATTTCCCAGCAAATGACTTTCATGGAAGTTTTTAG
AA sequence
>Potri.010G049700.2 pacid=42798103 polypeptide=Potri.010G049700.2.p locus=Potri.010G049700 ID=Potri.010G049700.2.v4.1 annot-version=v4.1
MGRLVFFSFLSIFSFLITFSDVMIPQKQVMALPLSTDSRWIVDENGQRVKLACVNWVSHLEVMVAEGLSKQPLDGIAKRILSMGFNCVRLTWPVFLVTND
TLGSLTVRQSLQSHGLLESISGIQANNPSIIDLSLLDVYQAVVSSLGNNNVMVILDNHISKPGWCCSNFDGNGFFGDQYFDPDLWITGLTRMASMFNGVP
NVVGMSLRNELRGPKQNVNDWYRYMQKGAEAVHSANPDVIVILSGLNYDKDLSFLRNRPMNLTFSGKIVFEVHWYSFTDGEAWKNGNSNQVCGRVVDNMM
RVSGFLLDQGWPLFVSEFGVDQRGTNVNDNRYLGCFLSVAAELDLDWALWTLVGSYYLRQGVIGMNEYYGVMNWNWCEARNSTFLQQISVLQSPFQGPGL
SEANPHKVIFHPSTGLCVLRKSMFEPLRLGRCTESEAWNYTPQKILSVKGTYFCLQTDDLAKPAKLGIICTDSNSKWETISDSKMHFSSTAANGIAVCLD
VDSNNTIVTNTCKCLSKDNACDPESQWFKLVNSTRSSTMTKPLSRMNSILNFPANDFHGSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.010G049700
[exp]
0 1
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Potri.002G113132
[exp]
1.41 0.9127
AT3G61490 Pectin lyase-like superfamily ... Potri.003G131700
[exp]
3.74 0.8771
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Potri.012G126500
[exp]
6.32 0.8557 NAC037
AT5G01930 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl ... Potri.006G109900
[exp]
6.48 0.8581
AT1G23460 Pectin lyase-like superfamily ... Potri.011G159000
[exp]
7.41 0.8533
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Potri.003G113000
[exp]
7.48 0.8269
AT1G23460 Pectin lyase-like superfamily ... Potri.001G463000
[exp]
8.12 0.8531
AT5G46940 Plant invertase/pectin methyle... Potri.014G044100
[exp]
10.48 0.8210
AT1G10460 GLP7 germin-like protein 7 (.1) Potri.010G038200
[exp]
11.40 0.8218
AT3G43120 SAUR-like auxin-responsive pro... Potri.018G132400
[exp]
12.12 0.7924

Potri.010G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.