Plant FIBer expression Database

Potri.010G049800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13130 543 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26130 513 / 2e-179 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26140 508 / 6e-178 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT5G17500 459 / 9e-159 Glycosyl hydrolase superfamily protein (.1)
AT5G16700 415 / 8e-142 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G049700
[exp]
758 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.008G183400
[exp]
732 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.001G097901
[exp]
313 / 2e-101 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.005G167800
[exp]
44 / 0.0002 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011404
[exp]
567 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006462
[exp]
558 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006461
[exp]
544 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10011403
[exp]
541 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10024686
[exp]
312 / 1e-100 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10032312
[exp]
268 / 4e-84 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10005737
[exp]
61 / 1e-11 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.010G049800.1 pacid=42798513 polypeptide=Potri.010G049800.1.p locus=Potri.010G049800 ID=Potri.010G049800.1.v4.1 annot-version=v4.1
ATGGGGAGGCTTGTTTTCTTCTCATTTATCTCCTTCTTCTCTTTCCTTACACCATTCTCTGATGTGATGATACCACAAAAGCAAGTCATGGCACTCCCTC
TGTCAACTGACTCACGGTGGATCGTGGACGAAAACGGGCAAAGAGTGAAGCTGGCATGCGTGAATTGGGTATCACATCTTGAGGTCATGGTAGCCGAGGG
GATTAGCAAGCAGCCCATGGATGGTATCGCCAAGCGGATTTTGTCCATGGGGTTCAACTGTGTTAGACTCACTTGGCCAGTTTTCTTGGTAACCAATGAC
ACTCTGGGCTCCCTCACTGTAAGACAATCCCTTCAAAGCCATGGTCTCCTCGAATCAATATCTGGTATCCAGGCCAACAACCCCTCCATCATTGATCTCT
CCCTCCTTGACGTTTACCAGGCAGTGGTGTCTAGTCTTGGGAACAATAATGTGATGGTGATATTGGACAATCACATAAGCAAGCCTGGTTGGTGCTGCAG
TAATTCTGATGGCAATGGCTTCTTCGGTGACCAATATTTCGACCCGGATCTATGGATCACAGGCCTAACTAGAATGGCGAGCATGTTTAAAGGTGTGCCT
AATGTGGTGGGCATGAGCTTGAGGAATGAGCTTCGAGGCCCCAAACAAAATGTCAATGATTGGTACAGGTACATGCAAAAAGGAGCTGAAGCAGTGCACT
CAGCGAACCCCGATGTTATTGTCATTCTATCGGGCCTGAACTATGACAAAGACTTGTCTTTCCTGCGCAATCGACCGGTGCATCTAACATTTAGTGGTAA
AATAGTGTTTGAAGTGCATTGGTATGGCTTTACAGATGGGGAGGCATGGAAAAGTGGCAACTCGAACCAAGTGTGTGGAAGAGTGGTGGATAATATGATG
AGGGTATCTGGATTTTTGTTGGACCAAGGCTGGCCATTGTTTGTGAGTGAGTTTGGGGTGGATCAAAGAGGCACAAATGTTAATGATAATAGGTACTTGG
GATGCTTCCTTAGTGTTGCAGCTGAACTTGACTTGGACTGGGCTTTGTGGACACTAGTTGGAAGCTACTATTTGAGGCAAGGTGTTATAGGAATGAATGA
GTACTATGGAGTTTTGAATTGGAATTGGCGTGAGGTCAGGAATTCAACATTCTTGCAGCTTATATCTGCCCTCCAATCTCCGTTTCGAGGTATAGCATTT
GTGACTTCTTCACTTTTTATAAGTTCCTCAAATATGAATCTTATGCTCCTGATCTATTCAATTGTTTTTTATAGTCAATCCTTAAGGTTGTGTTTGTTGG
AAATTTGTTTTTCATTATACAAATTAACGGTAAATAAGAAATTAATTTATAAAAGCTCTTGGTTTTTCTACTCAAAAAATCCTTAA
AA sequence
>Potri.010G049800.1 pacid=42798513 polypeptide=Potri.010G049800.1.p locus=Potri.010G049800 ID=Potri.010G049800.1.v4.1 annot-version=v4.1
MGRLVFFSFISFFSFLTPFSDVMIPQKQVMALPLSTDSRWIVDENGQRVKLACVNWVSHLEVMVAEGISKQPMDGIAKRILSMGFNCVRLTWPVFLVTND
TLGSLTVRQSLQSHGLLESISGIQANNPSIIDLSLLDVYQAVVSSLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFDPDLWITGLTRMASMFKGVP
NVVGMSLRNELRGPKQNVNDWYRYMQKGAEAVHSANPDVIVILSGLNYDKDLSFLRNRPVHLTFSGKIVFEVHWYGFTDGEAWKSGNSNQVCGRVVDNMM
RVSGFLLDQGWPLFVSEFGVDQRGTNVNDNRYLGCFLSVAAELDLDWALWTLVGSYYLRQGVIGMNEYYGVLNWNWREVRNSTFLQLISALQSPFRGIAF
VTSSLFISSSNMNLMLLIYSIVFYSQSLRLCLLEICFSLYKLTVNKKLIYKSSWFFYSKNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.010G049800
[exp]
0 1
AT1G55550 P-loop containing nucleoside t... Potri.001G000800
[exp]
5.65 0.7232
AT3G14920 Peptide-N4-(N-acetyl-beta-gluc... Potri.011G109700
[exp]
8.30 0.7350
Potri.001G375600
[exp]
9.74 0.7126
AT5G66120 3-dehydroquinate synthase, put... Potri.005G110900
[exp]
21.33 0.7091
AT4G34940 ARO1 armadillo repeat only 1 (.1) Potri.004G172500
[exp]
31.60 0.7008
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Potri.014G164400
[exp]
36.82 0.6277
AT1G51630 O-fucosyltransferase family pr... Potri.010G250600
[exp]
37.06 0.7103
AT4G38040 Exostosin family protein (.1) Potri.001G072500
[exp]
42.35 0.6959
AT1G30820 CTP synthase family protein (.... Potri.003G157900
[exp]
43.16 0.6796
Potri.005G218950
[exp]
53.29 0.5805

Potri.010G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.