Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 326 / 4e-101 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT1G67790 268 / 7e-81 unknown protein AT3G01670 252 / 7e-73 SEOa sieve element occlusion a, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050300 [exp] 429 / 2e-141 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 429 / 3e-141 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 424 / 4e-139 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 417 / 2e-136 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 412 / 2e-134 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 409 / 4e-133 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 407 / 2e-132 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 404 / 3e-131 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 400 / 1e-129 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034566 [exp] 614 / 0 AT1G67790 286 / 3e-86 unknown protein Lus10034567 [exp] 411 / 4e-134 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 404 / 3e-131 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 397 / 1e-128 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 397 / 3e-128 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 396 / 4e-128 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 390 / 2e-125 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 385 / 2e-123 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 380 / 4e-123 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 338 / 5e-106 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14576 [poplar] [flax] SEO_N Sieve element occlusion N-terminus PF14577 [poplar] [flax] SEO_C Sieve element occlusion C-terminus
Representative CDS sequence Show only first row Show all	>Potri.010G050200.1 pacid=42799969 polypeptide=Potri.010G050200.1.p locus=Potri.010G050200 ID=Potri.010G050200.1.v4.1 annot-version=v4.1 ATGAACTTGTTTGGTAATGACTGTTCTTCCCAGCATTCTTCGATGCCTTCAGAAGATGATATTCTGATAAAGAAACTCCTGTTGACACATGATCCTGATG GTCGTCGCCTAGATTCCGAGCTACTGCTTCGTGCAATGGAGAATGTCCTGTGTTATGCTGCTGCATCCCAAGTCTGTGGTTTTCATATTGATGCAATTGC AAAGGATGATGTAAGCGACATTGAAGTGGTTGGATCACAAGAAACACTGGCACAGATCATCGACAGAATTAAGATTGAGATGCTTCGCAAACATTCTGGC AAGGAAAACCTGCACACGAGAACGATGATCTTGTTTGATGTGCTTGGAAATTATAGATGGGATGTCAAGGCGGTATTAACACTTGCGGCCTTTGCAACAA CCTACGGTGAATTTTGCATCATAATGCAGGAATACCCTTATAACCCCTTGGCAGTATCAGTCGCCATGCTGAAGCACCTACCTCTCAACTTATGGCCATT GAAGCCCCAATTTAAGGCCTTGAGCTTCTTAGTCAGGACAATGATTGATGTTACCAAGTGCATAATAAAGTTCGAAGGGCTTCCCTTTAGATATGCACAG CTGGATGATGAAACTATGGTCATTGCAAAGTCTTGCATCTATGTAGCTGCTTACTGGGTCACAAGAAGCACAGTGGCATGCACTTCTCAAATCAGAGACT TGAAAGCCATGAAGCCTGAGCAAGTGTGGTCACATTCAACATTGATTGCAGCATGGGAGCTCTCAAGTCTGGCTTATAAGTTGAGCAGCATATGCAGTCA CCTCAGGCGGCAGGTGGATTTGTGTCATCAACAAATGGAGGAAAAGATGCATCAGAAGCTATTAAAAGTTTTCCAGGAGGTCCATCCTGATAACCAAGAT GTCCTAGGAATATTATTGGCTGCAAAGGATGAGTTACCACTCAAGAATTCCTCCACACAAGACAAGCTAGGTGTATCTGAAATGAAGGGCAAGGTAGTCT TACTTTTGGTATCTAAGGCAGAGCTCCTTCCACAAGAGGGATTGCTTCTGCTGCTTGATAGAACATATGATCATCCTTACCACAAGAAGTTAGAGGGAAG TTATGAAATTGTTTGGATCTCAATTTCTGATACATGGACTGATGCTGAAAGGGACATATTCAATTTTTTGTCAAATTCTTTGCCATGGTACTCAGTCCGG CGACCGTGGGTGCTCTACGCAGCTGTTGTGAACTACATAAAACAAGAATGGGACTACAAAAATGTCCCTCTTATTGTGGTATTGGATTCAAAAGGTATGG TCAGCAAATCAAATGCAATGGATATGGTGTTTATCTGGGGTGCCACAGCATACCCCTTCTCAACTTCGAAAGAAAAGGAACTCTGGGACGAAGAGAATTG GACCCTGAAACTTTTGCTTGATGAAATTGATCCTTTATTAACCACCTGGGTAGAAGAAGGCAGAAATATTTGCATTTATGGAAGTGACAACCTAGACTGG ATTAGGGAATTCAATGCCACGTGTAAGGTGATCAAAAATGCTGGTGTGCAGCTTGAAATGGTGTATGTTGGTTGTAAAGACCTTGGTGAACAAGTAAGAC GTCTGTTAGCTATTATCGATGAAGAACTGCACAAAAGTTTATTCTCTTTCACAAAACTCCATTTCTTTTGGCTTCGGTTGGAGAGTATCAGAAGATCAAA ACTCCAACTGGGACAATCAATCCATTCTGATGATCATATCTTGAAAGAGGTGTCAGCATTACTAGATACGGCCAACGAAGGGTGGGCCATAATCGGAAGA GGGAATACGACAGACATTGTAAAACTTTCAGCTAGTGAAGCAATAAAATGGTTGGATAGGTTTCCAGAATGGGAAGAAAATGTGGCAAAGTTAGGATTCG TGTCAGCACTTAGAGCTGCCATTGATCCACCTCCTCCTCCTCTAGGGCCTTGCAATCATTCGGAAGTTGTTCCTTATGCAGAAGGGCTAACAGAAGAAAC TGTACTGTGTGAGAAGTGTAAGCATCCCATGAAGAAGAACGTAGTTTATGAGTGA
AA sequence Show only first row Show all	>Potri.010G050200.1 pacid=42799969 polypeptide=Potri.010G050200.1.p locus=Potri.010G050200 ID=Potri.010G050200.1.v4.1 annot-version=v4.1 MNLFGNDCSSQHSSMPSEDDILIKKLLLTHDPDGRRLDSELLLRAMENVLCYAAASQVCGFHIDAIAKDDVSDIEVVGSQETLAQIIDRIKIEMLRKHSG KENLHTRTMILFDVLGNYRWDVKAVLTLAAFATTYGEFCIIMQEYPYNPLAVSVAMLKHLPLNLWPLKPQFKALSFLVRTMIDVTKCIIKFEGLPFRYAQ LDDETMVIAKSCIYVAAYWVTRSTVACTSQIRDLKAMKPEQVWSHSTLIAAWELSSLAYKLSSICSHLRRQVDLCHQQMEEKMHQKLLKVFQEVHPDNQD VLGILLAAKDELPLKNSSTQDKLGVSEMKGKVVLLLVSKAELLPQEGLLLLLDRTYDHPYHKKLEGSYEIVWISISDTWTDAERDIFNFLSNSLPWYSVR RPWVLYAAVVNYIKQEWDYKNVPLIVVLDSKGMVSKSNAMDMVFIWGATAYPFSTSKEKELWDEENWTLKLLLDEIDPLLTTWVEEGRNICIYGSDNLDW IREFNATCKVIKNAGVQLEMVYVGCKDLGEQVRRLLAIIDEELHKSLFSFTKLHFFWLRLESIRRSKLQLGQSIHSDDHILKEVSALLDTANEGWAIIGR GNTTDIVKLSASEAIKWLDRFPEWEENVAKLGFVSALRAAIDPPPPPLGPCNHSEVVPYAEGLTEETVLCEKCKHPMKKNVVYE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	0	1
AT3G50160			Plant protein of unknown funct...		Potri.006G042300 [exp]	2.00	0.9769
AT3G20600		NDR1	non race-specific disease resi...		Potri.004G023400 [exp]	5.00	0.9664
AT2G27300	NAC	NTL8, ANAC040	Arabidopsis NAC domain contain...		Potri.009G161300 [exp]	5.29	0.9596
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	6.00	0.9549
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	6.32	0.9748	NAC020
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	6.48	0.9509
AT5G19730			Pectin lyase-like superfamily ...		Potri.007G015700 [exp]	6.48	0.9312
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	6.92	0.9715
AT4G31980			unknown protein		Potri.013G146600 [exp]	7.93	0.9458
AT4G13600			Carbohydrate-binding X8 domain...		Potri.001G315700 [exp]	9.59	0.9685

Compare expression of checked genes

Potri.010G050200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.