Plant FIBer expression Database

Potri.010G051200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26115 392 / 1e-133 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036952
[exp]
396 / 3e-135 AT3G26115 452 / 7e-158 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Lus10006235
[exp]
0 / 1 AT3G26115 144 / 8e-40 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G051200.1 pacid=42798742 polypeptide=Potri.010G051200.1.p locus=Potri.010G051200 ID=Potri.010G051200.1.v4.1 annot-version=v4.1
ATGAAACTACAAGGTTTAAGCAGTATAAGAACAATCAAGGCCATGAAAACCGGGCTTTGCTCGGCTCAGTTTTCAAGTCATTCTCAGGGTCTTCCTAAAG
TTAAACTGAGCGATGAAGAGTTAATGTCAAAGGTGCTTAATAGAAGATGGATGTTACATATCCCAGATACTGAAATTCACCAAATAAAGCTTTCTTTATC
GCAAGGACGAAATAGGGATGGACCATCTGGTAACTTATCCTTTTTGAACAATACCAAACCATATTTTGGTGATGACTTGATGGAGAAAGGCAGTGAAGAT
CCTTTCTTCTATGTTGTAAGGGATGATTTGTTGCATCCGTTGGTCAATGGTAATAAAGCGAGAAAACTAGATGCGTTGCTCCCCCTCCTTGTAGATTATT
CTGTGACTGATGTGGTTACATGTGGAGGCTGTCAAAGTGCGCACGCAGCAGCTGTTGCTGTTTCATGTGCTGAGAGAGGGCTAAAATCACATTTGCTTCT
GAGAGGAGAGCAGCCTGAAATTCTGACGGGTTATAACCTAATTTCAACAATATATGGAGATATCACTTATGTTCCTAGATCTATTTATGCCCATCGGATG
AATATGCTGAAGAGTCATGCTGATTTGGTGGCAAGCAACACTGGCCATATTTTATGCTGTAATGACATCCTTGAGTCATCTTTATCAGCCCAGTCTAGTA
CTTCAAGCTCTGGGCACATAGATGCTCATGGAAACACCGAGAACCATCCAAGAAAGGTCGTAATCATCAATGAAGGAGCAGGGGATGTTGTAGCATTACT
AGGTGTCATTCGCCTAGTGCAGTATCTGTGCCAGAGTCATTTACTTGGAAAAGAGAGACAGATAAAGCTGGTTGTAGATGCTGGCACTGGAACAACAGCC
ATCGGTTTGGGAATTGGAGCCCAATGTTTAGGGCTCCCATGGGAGGTAACTGCAGTCATGTTGGCTGATACAATTGATGCATACAGACAACAAGAGCAAA
AATTAATTTCTGATTTCAGGACAAGATTTGGTTTTCATCTTACTGACCATTGCTTAAATGAAGTAGATGGAGTTGTTCATTGGGTCGCACGCTGCCATCA
GAGAAAATTTGGCAATGTTTTGGAAGGAGAAACAGAGACATGCCAACAAATTGCACAGCAGACTGGTATTCTAGTGGATCCTGTGTATACTTTGGCTGCA
TGGGAAATGGCAACACAACTTAGCAGGAAAGAAATGGAAGGGGGTGCACGAGTGGTGATGCTTCACACAGGGGGCACTCTAGGCTTGTTTGGTTTAGCAC
AGAGGTATAAATCTTACTTCCGTAAGCTCAAAGAAGGATTATCCTCTGTAAAAGTTGCACTTCATTAA
AA sequence
>Potri.010G051200.1 pacid=42798742 polypeptide=Potri.010G051200.1.p locus=Potri.010G051200 ID=Potri.010G051200.1.v4.1 annot-version=v4.1
MKLQGLSSIRTIKAMKTGLCSAQFSSHSQGLPKVKLSDEELMSKVLNRRWMLHIPDTEIHQIKLSLSQGRNRDGPSGNLSFLNNTKPYFGDDLMEKGSED
PFFYVVRDDLLHPLVNGNKARKLDALLPLLVDYSVTDVVTCGGCQSAHAAAVAVSCAERGLKSHLLLRGEQPEILTGYNLISTIYGDITYVPRSIYAHRM
NMLKSHADLVASNTGHILCCNDILESSLSAQSSTSSSGHIDAHGNTENHPRKVVIINEGAGDVVALLGVIRLVQYLCQSHLLGKERQIKLVVDAGTGTTA
IGLGIGAQCLGLPWEVTAVMLADTIDAYRQQEQKLISDFRTRFGFHLTDHCLNEVDGVVHWVARCHQRKFGNVLEGETETCQQIAQQTGILVDPVYTLAA
WEMATQLSRKEMEGGARVVMLHTGGTLGLFGLAQRYKSYFRKLKEGLSSVKVALH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26115 Pyridoxal-5'-phosphate-depende... Potri.010G051200
[exp]
0 1
AT4G11640 ATSR serine racemase (.1) Potri.001G106000
[exp]
6.92 0.8816
AT1G48420 DCD, ATACD1, AC... A. THALIANA 1-AMINOCYCLOPROPAN... Potri.012G038900
[exp]
9.89 0.8718
AT2G39670 Radical SAM superfamily protei... Potri.008G056500
[exp]
10.81 0.9230
AT5G11580 Regulator of chromosome conden... Potri.018G044400
[exp]
11.83 0.8745
AT1G76050 Pseudouridine synthase family ... Potri.002G016800
[exp]
13.03 0.8852
AT1G30680 toprim domain-containing prote... Potri.001G461200
[exp]
13.41 0.8743
AT1G78010 tRNA modification GTPase, puta... Potri.002G092600
[exp]
13.85 0.8958
AT2G16530 3-oxo-5-alpha-steroid 4-dehydr... Potri.004G163600
[exp]
14.14 0.8913
AT5G06060 NAD(P)-binding Rossmann-fold s... Potri.008G059100
[exp]
14.42 0.8711
AT2G31840 MRL7-L Mesophyll-cell RNAi Library li... Potri.007G145700
[exp]
15.62 0.9208

Potri.010G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.