Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13180 812 / 0 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) AT2G42100 236 / 6e-74 Actin-like ATPase superfamily protein (.1) AT5G59370 230 / 8e-72 ACT4 actin 4 (.1.2) AT3G12110 230 / 1e-71 ACT11 actin-11 (.1) AT3G46520 230 / 1e-71 ACT12 actin-12 (.1) AT3G53750 230 / 2e-71 ACT3 actin 3 (.1) AT2G37620 230 / 2e-71 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 229 / 2e-71 ACT2/7, ACT7 actin 7 (.1) AT1G49240 226 / 4e-70 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 224 / 1e-69 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182700 [exp] 859 / 0 AT1G13180 771 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.001G309500 [exp] 232 / 2e-72 AT5G09810 775 / 0.0 actin 7 (.1) Potri.008G055500 [exp] 232 / 2e-72 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 231 / 7e-72 AT5G09810 774 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 230 / 9e-72 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 230 / 1e-71 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 230 / 1e-71 AT3G12110 767 / 0.0 actin-11 (.1) Potri.011G148000 [exp] 229 / 3e-71 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 228 / 7e-71 AT5G09810 769 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006238 [exp] 813 / 0 AT1G13180 786 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10036948 [exp] 721 / 0 AT1G13180 700 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10005819 [exp] 231 / 8e-72 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 231 / 8e-72 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 231 / 8e-72 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016259 [exp] 231 / 8e-72 AT3G46520 767 / 0.0 actin-12 (.1) Lus10006784 [exp] 231 / 9e-72 AT5G09810 769 / 0.0 actin 7 (.1) Lus10005457 [exp] 230 / 1e-71 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 230 / 1e-71 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 230 / 1e-71 AT3G12110 768 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.010G051500.1 pacid=42798218 polypeptide=Potri.010G051500.1.p locus=Potri.010G051500 ID=Potri.010G051500.1.v4.1 annot-version=v4.1 ATGGACGCTTCCTCTCGTCCTGCCGTCGTCATTGACAACGGCTCAGGGTATACTAAGATGGGATTTGCGGGAAATGTAGAGCCGTGTTTTATTTTACCAT CAGTAGTAGCAGTAAACGAATCGTTTTTAAATCAATCGCGAACTTCTTCTTCGAAAGCAAATTGGCTAGCGCAGCATAGTGCAGGGGTTATGGCCGATCT AGATTTCTTTATAGGAGACGAGGCGCTTGCCAAATCGAGATCTAGTAATACTTATAATCTTAGCTATCCAATCAAACATGGTCAAGTTGCTAACTGGGAT GCCATGGAAAGGTACTGGCAGCAGTGTATTTTTAATTATTTGCGTTGCGATCCAGAGGATCATTACTTTTTATTGACTGAAAGCCCGCTTACTGCACCGG AGAGTCGTGAGTATACCGGTGAGATTATGTTCGAGACCTTTAATGTTCCTGGGCTTTATATTGCCGTCAATTCTGTGCTCGCTCTTGCAGCTGGTTACAC AACATCCAAGTGTGAGATGACAGGGGTTGTTGTGGATGCTGGAGATGGAGCTACTTATGTTGTACCTGTCGCAGATGGTTATGTTATTGGGAGCAGCATT AAGTCAATCCCTATTGCTGGCAAAGATGTTACTCTATTTATCCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCCCCGGAAGATTCATTTGAAGTAG CTCGGAAAGCGAAGGAAATGCATTGCTATACTTGTTCCGATATTGTCAAGGAGTTCAACAAGCATGACAAGGAACCGGCAAAGTATATCAAGCAATGGAG AGGTATTAAACCAAAAACAGGAGCACCATATTCCTGTGACATTGGATATGAACGATTTCTTGGTCCTGAGGTATTCTTTAATCCTGAGATTTATAGCAGT GACTTTACCACTCCTTTACCAGCTGTGATAGATAAGTGTATTCAGTCTGCACCAATTGACACAAGGAGGGCTTTGTATAAGAATATAGTGTTATCTGGAG GATCAACCATGTTCAAAGACTTTGGTAGAAGATTGCAACGGGATTTGAAGAAGATTGTGGATACACGTGTTCTTGCATCTGAAGCTAGACTTGGTGGGGG AGTAAAATCACAACCAGTGGAAGTGAATGTAGTCAGCCATCCTATCCAGAGATTTGCAGTCTGGTTCGGCGGTTCAGTGTTAGCATCAACACCTGAGTTT TTTGCTGCCTGCCATACAAAAGCAGAATATGAGGAATACGGAGCAAGCATTTGCCGCACAAATCCTGTTTTCAAGGGAATGTATTGA
AA sequence Show only first row Show all	>Potri.010G051500.1 pacid=42798218 polypeptide=Potri.010G051500.1.p locus=Potri.010G051500 ID=Potri.010G051500.1.v4.1 annot-version=v4.1 MDASSRPAVVIDNGSGYTKMGFAGNVEPCFILPSVVAVNESFLNQSRTSSSKANWLAQHSAGVMADLDFFIGDEALAKSRSSNTYNLSYPIKHGQVANWD AMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDAGDGATYVVPVADGYVIGSSI KSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKAKEMHCYTCSDIVKEFNKHDKEPAKYIKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSS DFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDTRVLASEARLGGGVKSQPVEVNVVSHPIQRFAVWFGGSVLASTPEF FAACHTKAEYEEYGASICRTNPVFKGMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	0	1	ARP3.2
AT1G31780			unknown protein		Potri.004G236600 [exp]	1.41	0.9151
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	12.48	0.8652
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	13.19	0.8808
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.005G234100 [exp]	14.66	0.8678
AT1G69430			unknown protein		Potri.006G159000 [exp]	22.97	0.8575
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	25.51	0.8637
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	26.26	0.8346
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Potri.009G082500 [exp]	27.87	0.7743
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	31.46	0.8492	PCBER7
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	31.81	0.8718

Compare expression of checked genes

Potri.010G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.