Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13190 197 / 3e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55670 131 / 5e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G21660 51 / 2e-07 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G08000 50 / 4e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G43370 51 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 47 / 2e-06 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G04600 46 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 44 / 0.0002 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT3G23830 42 / 0.0002 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT2G37220 43 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 504 / 1e-171 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 50 / 6e-07 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.006G208500 [exp] 49 / 8e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G116400 [exp] 49 / 2e-06 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.014G025400 [exp] 44 / 0.0003 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.017G033400 [exp] 44 / 0.0004 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 43 / 0.0004 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 43 / 0.0005 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.002G124200 [exp] 43 / 0.0006 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019147 [exp] 331 / 1e-104 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039103 [exp] 328 / 7e-102 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038759 [exp] 319 / 3e-101 AT1G13190 378 / 1e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038757 [exp] 225 / 1e-69 AT5G55670 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038758 [exp] 169 / 2e-49 AT5G55670 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10026344 [exp] 48 / 3e-06 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 48 / 3e-06 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10040454 [exp] 48 / 9e-06 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 46 / 2e-05 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10042321 [exp] 46 / 2e-05 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.010G051600.1 pacid=42798638 polypeptide=Potri.010G051600.1.p locus=Potri.010G051600 ID=Potri.010G051600.1.v4.1 annot-version=v4.1 ATGGATTTCGAAGAAGAGGAGAAGATGCAATATCAGGGAAGCGGTGCCATACCTGCACTTGCAGAGGAAGAGTTGGGAGAAGATGATGAGTATGACGATC TATATAATGATGTCAATGTTGGGGAGAATTTCTTGCAGATGCATGGCTCTGAAGCGCCAGCCCCACCTGCTACAGCAGGGAACGGAGGATTCCAGACTCG AAATGCTCACGAATCAAGAGTTGAAACTGGGGTTTCACAGGTGCTTGCTACCTCTGGGGCCGGGGTTGCAGTTGAAGGCAAATATTCTAATGCCGGGGCT CATTTTCCAGAGCAGAAGCAGGCAGCAATTGGTGTCGAAGCAAACGATGTAGGGTCCATTGGTTATGGTGATGGATCTTCTGTTGCTCAGAAAGGGAGGT TTATGGAGATGGGTCATGATGTTCATGTCAGGAACATGGGATTTCAAAAACCAGCATCAGTGCCTCCCGGTACAGGGGTCGATCCTTCTGATACGAGTAG AAAAATTGCTAACGAGCCTGAACCTTTGCCAAATACTGGCAGTGCTGGTCCTCGAGGTGTTCCGCAGATGCAAGTTAATCAAATGAATATGAATGCAGAT GTTAATCGCCCAGTGGTTAATGAAAATCAGGTCCGGCCACCTATAGAGAATGGTCCTACCACTCTTTATGTGGGAGAATTACATTGGTGGACCACCGATG CAGAGCTTGAGAGTGTTGCATCTCAATATGGAAGGGTCAAAGAGATTAAATTCTTTGATGAGAGGGCTAGTGGTAAGTCTAAAGGCTATTGCCAAGTTGA CTTCTATGAAGCTGCTGCTGCAGCTGCATGCAAAGAGGGAATGAATGAGCATGTTTTCAATGGACGACCTTGTGTTGTGGCCTTTGCTTCTGCACAAACA CTCAAGCAGATGGGGGCTTCTTACATGAGCAAAACCCAGGGTCAGCCCCAGCCCCAGTCTCAGGGAAGGGGGTCTATGAATGATGGTATGGGAAGAGGTG GTAATGCGAATTATCAAAGTGGAGATGGAGGAAGGAACTATGGAAGAGGTGGGTGGGGAAGGGGTGGGCAGGGAGTTCTCAACCGGGGACCTGGGGGTGG ACCAATGAGGGGAAGAGGTGGCATGGGTCCCAAGAATATGGCTGGGAATGTTGCTGGAGTTGGAAGCGGTGCCAATGGTGGAGGGTATGGACAAGGAATT GCAGGTCCTGCATTTGGTGGACCTGCTGGCGGAATGATGCATCACCAGGGTATGATGGGTGCTGGATTTGATCCATTATATATGGGGCGAGGGGGTGGTT ATGGGGGTTTTCCTGGCCATGGTTTTCCTGGCATGCTCCCTTCATTTCCTGCTGTTAATTCAATGGGACTTGCTGGGGTGGCTCCTCATGTCAACCCGGC TTTCTTTGCCCGAGGAATGGCACCTAATGGGATGGGAATGATGGCTTCCTCTGGAATGGAAGGGCCGAATCCAGGAAAGTGGCCTGACACAAGCATGGGA GGATGGGGAGAAGAGCCTGGTCGAAGGACAAGGGAGTCAAGCTATGATGGTGACGAGGGTGCTTCTGAATATGGATATGGAGAGGGGAATCATGAAAAGG GAGCTCGGTCAAGTGGCGCCTCTAGAGAAAAAGAACGGGTTTCTGAGCGTGACTGGTCGGGTAATTCTGACAGGCGGCACCGTGATGAGAGGGAACAGGA CTGGGACAGATCTGAAAGGGAGCCCAAGTACAGGGAAGAGAAAGATACTTACCGTGGACATCGTCAAAGAGAGCGCGACTCGGGTTATGAGGATGATCGG GATAGAGGGCACTCTTCTTCAAGAGCTCGGAGCAGGTCCCGTGCGGCTCCAGAAGAAGATTACAGGTCTCGATCAAGGGATGTAGACTATGGCAAAAGGA GGCGCCCGCCATCAGAGTGA
AA sequence Show only first row Show all	>Potri.010G051600.1 pacid=42798638 polypeptide=Potri.010G051600.1.p locus=Potri.010G051600 ID=Potri.010G051600.1.v4.1 annot-version=v4.1 MDFEEEEKMQYQGSGAIPALAEEELGEDDEYDDLYNDVNVGENFLQMHGSEAPAPPATAGNGGFQTRNAHESRVETGVSQVLATSGAGVAVEGKYSNAGA HFPEQKQAAIGVEANDVGSIGYGDGSSVAQKGRFMEMGHDVHVRNMGFQKPASVPPGTGVDPSDTSRKIANEPEPLPNTGSAGPRGVPQMQVNQMNMNAD VNRPVVNENQVRPPIENGPTTLYVGELHWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGRPCVVAFASAQT LKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGDGGRNYGRGGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAGNVAGVGSGANGGGYGQGI AGPAFGGPAGGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMASSGMEGPNPGKWPDTSMG GWGEEPGRRTRESSYDGDEGASEYGYGEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRGHRQRERDSGYEDDR DRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPPSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	0	1
AT3G49601			unknown protein		Potri.006G233000 [exp]	2.00	0.8790
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	2.44	0.8485
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	6.00	0.7897
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	6.24	0.8446
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	8.06	0.8227
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	9.48	0.7807
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	9.79	0.8086
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	11.74	0.8202
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	11.83	0.8229
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	13.07	0.8022

Compare expression of checked genes

Potri.010G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.