Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24510 989 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 305 / 4e-97 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 262 / 1e-80 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 259 / 5e-80 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 235 / 2e-70 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 233 / 1e-69 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G02530 192 / 1e-54 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 191 / 7e-54 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 176 / 2e-48 TCP-1/cpn60 chaperonin family protein (.1) AT1G67760 99 / 2e-24 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182300 [exp] 1046 / 0 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 305 / 3e-97 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 303 / 1e-96 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 265 / 4e-82 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 265 / 4e-82 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 262 / 1e-80 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 261 / 4e-80 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 260 / 5e-80 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 251 / 3e-76 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036947 [exp] 990 / 0 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 984 / 0 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 984 / 0 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006240 [exp] 802 / 0 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10000113 [exp] 643 / 0 AT1G24510 648 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 293 / 7e-93 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 267 / 1e-82 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 266 / 3e-82 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 262 / 4e-81 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 261 / 5e-80 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.010G051700.3 pacid=42799468 polypeptide=Potri.010G051700.3.p locus=Potri.010G051700 ID=Potri.010G051700.3.v4.1 annot-version=v4.1 ATGGCGTTAGCGTTTGATGAATTCGGGAGACCCTTCGTAATCATAAAAGAACAAGACCAGAAGGTTCGATTGAGAGGGCTCGATGCTCAAAAGGCCAACA TTGCTTCTGGTATGGCGGTCTCTCGCATCCTTCGAACCTCCCTCGGTCCCAAAGGCATGGACAAAATGCTCCAGAGCCCCGACGGCGATGTCACCATCAC AAATGATGGTGCTACGATATTGGAGCAAATGGATGTGGACAATCAGATTGCAAAACTGTTGGTTGAGCTTTCGCGGAGTCAGGATTATGAAATAGGGGAT GGGACTACTGGTGTTGTTGTTCTGGCTGGTGCTCTTTTAGAGCAGGCTCAGAAGCTGTTGGAGCGTGGGGTTCACCCCATTCGCGTTGCCGAGGGTTACG AGACAGCTTCTAGAATTGCTGTTGAACATTTGGAGAAGATTGCACAGAAGTTTGACTTTGGAGTTAATAATATTGAGCCCTTGGTTAAAACTTGCATGAC TACTTTGTCTTCCAAGATTGTGAATCGGTGCAAACGCAGTTTAGCAGAGATTTCTGTTAAAGCAGTCCTTGCCGTTGCAGATTTAGAGAGGAAAGATGTT AATCTAGATTTGATAAAGGTTGAGGGGAAAGTCGGAGGCAAGTTGGAAGATACTGAACTGATTTATGGGATACTTGTTGACAAAGAAATGAGTCATCCGC AGATGCCAAAGCAAATTGAAGATGCAAAAATTGCTATCTTGACCTGCCCCTTTGAACCACCTAAGCCAAAGACTAAACATAAGGTGGACATTGATACAGT TGAAAAGTTTCAAACTTTGCGTAAGCAAGAGCAGCAGTACTTCGATAACATGGTTCAGAAATGCAAGGGTGTAGGTGCAACCTTGGTTATCTGTCAATGG GGGTTTGATGATGAGGCAAATCATTTATTAATGCACAGGAACTTGCCTGCAGTCCGGTGGGTTGGTGGTGTAGAGTTAGAGCTGATAGCAATAGCCACAG GTGGAAGAATAGTGCCAAGGTTCGAGGAGTTGACACCAGAAAAGCTAGGAAAGGCTGGTTTGGTTCGAGAAAAGGCTTTTGGCACAACAAAAGATAGAAT GCTGTATGTTGAACACTGTGCAAATTCAAGGGCAGTAACCATATTTATTCGTGGAGGTAACAAAATGATGATTGAGGAGACAAAGCGTAGCATCCATGAT GCATTGTGTGTGGCAAGGAATCTCATTCGCAACAATTCTATTGTATATGGTGGTGGCTCATCTGAGATTTCCTGCTCAATTTCTGTGGAGGCCGCAGCAG ATAGATATCCAGGAGTTGAGCAGTATGCTATCAGGGCATTTGCAGATGCTTTAGATTCCGTCCCTATGTCGCTTGCAGAAAATAGTGGCCTCCAACCCAT TGAGACATTATCTGCTGTGAAATCTCAACAAATTAAGGAGAACAATCCTTACTGTGGAATAGATTGCAATGATGCTGGTACAAATGACATGCGAGAGCAA AATGTATTTGAGACTCTTATCGGAAAGCAGCAGCAGATTTTGCTAGCAACACAAGTTGTCAAAATGATTCTAAAAATCGACGATGTCATCTCCCCTTCTG ATTTCTGA
AA sequence Show only first row Show all	>Potri.010G051700.3 pacid=42799468 polypeptide=Potri.010G051700.3.p locus=Potri.010G051700 ID=Potri.010G051700.3.v4.1 annot-version=v4.1 MALAFDEFGRPFVIIKEQDQKVRLRGLDAQKANIASGMAVSRILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLLVELSRSQDYEIGD GTTGVVVLAGALLEQAQKLLERGVHPIRVAEGYETASRIAVEHLEKIAQKFDFGVNNIEPLVKTCMTTLSSKIVNRCKRSLAEISVKAVLAVADLERKDV NLDLIKVEGKVGGKLEDTELIYGILVDKEMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRKQEQQYFDNMVQKCKGVGATLVICQW GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFEELTPEKLGKAGLVREKAFGTTKDRMLYVEHCANSRAVTIFIRGGNKMMIEETKRSIHD ALCVARNLIRNNSIVYGGGSSEISCSISVEAAADRYPGVEQYAIRAFADALDSVPMSLAENSGLQPIETLSAVKSQQIKENNPYCGIDCNDAGTNDMREQ NVFETLIGKQQQILLATQVVKMILKIDDVISPSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.010G051700 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Potri.003G107900 [exp]	3.16	0.6826
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	6.16	0.7119
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.014G024200 [exp]	12.84	0.6067
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	19.51	0.7040
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	19.74	0.6693
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	24.97	0.6913
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	26.45	0.7006
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	27.05	0.7036
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	28.30	0.6885
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	29.22	0.6915	GLYRS.2

Compare expression of checked genes

Potri.010G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.