Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67750 645 / 0 Pectate lyase family protein (.1) AT5G63180 630 / 0 Pectin lyase-like superfamily protein (.1) AT4G24780 610 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G27400 567 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 565 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 553 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 551 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 542 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 541 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 526 / 0 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182200 [exp] 669 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 662 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 655 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 611 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 566 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 560 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 560 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 557 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 478 / 1e-166 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036946 [exp] 622 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 606 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 605 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10033037 [exp] 603 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 585 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 582 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 565 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 564 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 560 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 560 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.010G051800.1 pacid=42797000 polypeptide=Potri.010G051800.1.p locus=Potri.010G051800 ID=Potri.010G051800.1.v4.1 annot-version=v4.1 ATGTCCTGTTATTTTTCTAACCAGTTGAGCTCTTTTACCCCTCTTCATTCCCTTTATATAGCCATCACATTCCTTGTAGTTTCTCACGAAATTTATGTGC CCATATCATTCTTTCTGAACAATATGGCAATTCCACTCTCTCTTTCAGTACTCCTGCTTATTCTAGCTCCAAGTTTTATTTCCTGTTTGCCAGTTCAAGA TCCTGAATTGGTAGTGGAAGAAGTACACAGGAGCATCAATGCCTCTCGGAGGAACTTGGCCTTCCTTTCTTGTGGAACCGGCAACCCCATAGACGACTGC TGGCGGTGTGACCCCAATTGGGAGAAGAATCGGCAAAGATTAGCCAATTGTGCAATTGGGTTCGGTAAGAATGCTATCGGTGGCAGGGATGGTAAGATAT ATGTAGTGACAGACTCCGGTCATGATGACCCAGTGAATCCCAAGCCAGGCACTCTTAGGCATGCTGTTATACAAGATGAGCCTCTATGGATCACTTTCGC TCGTGACATGGTGATCAGGCTCAAGGAAGAATTGATCATGAACTCTTTCAAGACAATCGACGGAAGAGGAGCTAATGTGCACATTGCTGGAGGTCCATGC ATCACTATACAATATGTGACCAACATTATCATTCATGGTATAAATATTCATGATTGCAAGCAAGGAGGGAATGCCTATGTGAGGGATTCTCCTAGCCATT ACGGGTGGAGGACTATATCGGACGGCGACGGGGTATCGATATTCGGAGGTAGCCAGGTGTGGGTGGATCATTGCTCTTTATCCAATTGCAATGATGGGTT GATTGATGCAATTCATGGCTCCACAGCCATAACAATCTCCAACAGTTACTTCACTCGTCATAACAAGGTCATGCTCTTGGGCCACAGTGATAGCTATAAA CAAGACAAGAATATGCAAGTCACCATTGCCTTCAACCACTTCGGAGAAGGGCTTGTGCAGAGAATGCCAAGATGTAGACATGGATATTTTCACGTGGTAA ACAATGACTATACACACTGGAAAATGTATGCAATTGGTGGCAGTGCTGCCCCTACAATTAATAGCCAAGGCAATAGATTTCTTGCTCCCAATGATAGATT TAAAAAAGAGGTAACTAAACATGAGGCTGCACCACAAAGCCAATGGAAGCGTTGGAATTGGAGGTCCGACGGGGATTTGATGTTAAATGGAGCGTTCTTC ACACCATCTGGTGCTGGAGCTTCTTCTAGTTACGCCAGGGCATCCAGCTTAAGTGCAAGACCATCTTCCCTGGTGAGCTCCATCACAGCAGGAGCAGGTG CACTTGTTTGCAAGAAGGGTTCACGCTGCTGA
AA sequence Show only first row Show all	>Potri.010G051800.1 pacid=42797000 polypeptide=Potri.010G051800.1.p locus=Potri.010G051800 ID=Potri.010G051800.1.v4.1 annot-version=v4.1 MSCYFSNQLSSFTPLHSLYIAITFLVVSHEIYVPISFFLNNMAIPLSLSVLLLILAPSFISCLPVQDPELVVEEVHRSINASRRNLAFLSCGTGNPIDDC WRCDPNWEKNRQRLANCAIGFGKNAIGGRDGKIYVVTDSGHDDPVNPKPGTLRHAVIQDEPLWITFARDMVIRLKEELIMNSFKTIDGRGANVHIAGGPC ITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTISDGDGVSIFGGSQVWVDHCSLSNCNDGLIDAIHGSTAITISNSYFTRHNKVMLLGHSDSYK QDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDRFKKEVTKHEAAPQSQWKRWNWRSDGDLMLNGAFF TPSGAGASSSYARASSLSARPSSLVSSITAGAGALVCKKGSRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67750			Pectate lyase family protein (...		Potri.010G051800 [exp]	0	1
AT1G05440			C-8 sterol isomerases (.1)		Potri.010G086100 [exp]	1.41	0.8620
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.003G119000 [exp]	1.41	0.8085
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	4.00	0.7696
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	10.95	0.7615
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.006G048300 [exp]	11.48	0.7879
					Potri.002G048450 [exp]	22.69	0.7870
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	31.74	0.7550	SAP.1
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Potri.003G194200 [exp]	39.49	0.7211	Pt-ATCHX1.1
					Potri.003G206401 [exp]	41.83	0.6613
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054800 [exp]	54.68	0.7670

Compare expression of checked genes

Potri.010G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.