Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24490 502 / 2e-174 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) AT2G28800 453 / 8e-156 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) AT2G46470 45 / 8e-05 OXA1L inner membrane protein OXA1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182000 [exp] 803 / 0 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.001G237800 [exp] 427 / 8e-146 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.009G029100 [exp] 408 / 2e-138 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006454 [exp] 540 / 0 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10040841 [exp] 419 / 3e-142 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10016570 [exp] 399 / 7e-135 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10011398 [exp] 370 / 6e-123 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF02096 [poplar] [flax] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Potri.010G051900.3 pacid=42797418 polypeptide=Potri.010G051900.3.p locus=Potri.010G051900 ID=Potri.010G051900.3.v4.1 annot-version=v4.1 ATGGCTTCTCATCTCTCTTGTACAATACCAAACCTAATCCCTCTCCCTCCCTCCCCTTTTACTGACCGAACCAAAACCTCTAACTCTCTCCTCCTTCACC CAACTCACCTTCCCAAACCTCTAATTCCTCGCGGTTCGCTCTGTGTCGCCCGGTTCGGTCTCAAACCGGGTTTCTTTCCTGACCCGGATAAAGCGGAGGC TGTAATCAAGGACTTGTTTGGTCGAGCAGAGAGTATTGTTTACACAATTGCCGATGCTGCTGTCTCCAACTCGGACCAGGTTGTTGATAGTAGTACCACA CAGAACAGTGATTGGCTTTCTGGTATTACTTACGGCCTCGAGAGTACTTTAAAGGTTTTGAAAGATGGGTTATCTGCTGTGCATTTACCTTATGCTTATG GTTTTGCTATCATACTCTTGACTGTTCTTGTTAAGGCTGCTACATTTCCTTTGAGTAAGAAACAGGTGGAATCTGCTATGGCCATGCGATCTTTGCAACC CCAAATTAAGGCCATTCAACAACGCTATGCCGGTGATCAGGAGAGGATTCAACTTGAGACTGCTCGGTTGTATAAGCTAGCTGGGATAAACCCGCTTGCA GGATGTCTCCCTACACTTGCTACAATTCCAGTATGGATTGGACTCTACAGAGCCCTTTCAAATGTAGCGAACGAGGGGCTCCTCACAGAAGGCTTCTTTT GGATACCCTCTCTAGCTGGTCCAACTGCAATTGCTTCTCGTCAAAATGGCAGTGGAATCTCTTGGCTTTTCCCTTTTGTAGATGGACATCCACCCCTTGG ATGGTCAGATACCGTGGCATATCTTGTTTTGCCTGTCATGCTGGTTGTCTCACAATACATCTCTGTCCAAATCATGCAATCATCACAGTTTCAGAGCGAT GATCCAAACGTGAAGAATTCTCAAGCAATAACAAAGTTCCTTCCATTAATGATTGGTTACTTTTCTCTTTCTGTTCCTTCTGGACTAAGCCTTTATTGGC TTACAAATAACATATTAAGCACAGCACAACAGGTGTGGCTTCAAAAGTCAGGGGGTGCAAAAAATCCTATGATGAAGTCCAGTGATGATATTGTCAAAGA AGACCAGCTGCAGATTCAGAAACCCGTCTCTGAATTAAATTCTGTACAAACTAAGACCAGGCAAGAAGAAAAGTTTACACCAGAAGGGTTGCGTCCTGGT GAAAGATTCAAACAATTAAAGGACCAAGAGGCAAGGAAAAGGCAACAAAGAGAAGAAGAGAAGAGGAAAGCGGAAGAGGCTGCACGTAGAGGAAGTCAAA TGGAAAACGATGAACTTGAGAATGAAAGCAGTTCATTTGAGAGAGGAAATGGGACCAGCTCAGTTGGTGCTGTTGTAATTGATGACATGTCTGCAGTGGC CTTTCATGATTCCTCTGCTCTTAAGGTTGTAAATGGTGATTTATCTGGTCAGGACCAGAAGCAAGATGAGGAAACAAATTATGTTGTGGAAACAAGTGAA GTTTCTGCTCCTACCGAGGTTTGTGCAAGGGATGAACAACCTGACAATAAACGAAAGGAAGCAGTTGAAGTAAATGGTAGTGTGGCCACCACGGACGATA AAATCACCGAAGACGCCCATCAAGCCAAAAGGGCGTGA
AA sequence Show only first row Show all	>Potri.010G051900.3 pacid=42797418 polypeptide=Potri.010G051900.3.p locus=Potri.010G051900 ID=Potri.010G051900.3.v4.1 annot-version=v4.1 MASHLSCTIPNLIPLPPSPFTDRTKTSNSLLLHPTHLPKPLIPRGSLCVARFGLKPGFFPDPDKAEAVIKDLFGRAESIVYTIADAAVSNSDQVVDSSTT QNSDWLSGITYGLESTLKVLKDGLSAVHLPYAYGFAIILLTVLVKAATFPLSKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLA GCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTAIASRQNGSGISWLFPFVDGHPPLGWSDTVAYLVLPVMLVVSQYISVQIMQSSQFQSD DPNVKNSQAITKFLPLMIGYFSLSVPSGLSLYWLTNNILSTAQQVWLQKSGGAKNPMMKSSDDIVKEDQLQIQKPVSELNSVQTKTRQEEKFTPEGLRPG ERFKQLKDQEARKRQQREEEKRKAEEAARRGSQMENDELENESSSFERGNGTSSVGAVVIDDMSAVAFHDSSALKVVNGDLSGQDQKQDEETNYVVETSE VSAPTEVCARDEQPDNKRKEAVEVNGSVATTDDKITEDAHQAKRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.010G051900 [exp]	0	1
AT3G06980			DEA(D/H)-box RNA helicase fami...		Potri.010G004700 [exp]	2.64	0.9671
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	5.38	0.9462
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	6.24	0.9635
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.004G002600 [exp]	7.07	0.9543
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	8.00	0.9648
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	9.48	0.9622
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	9.53	0.9518
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	10.00	0.9624
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	12.96	0.9521
AT1G08530			unknown protein		Potri.013G052700 [exp]	13.26	0.9291

Compare expression of checked genes

Potri.010G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.