Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSBY.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67740 101 / 6e-27 YCF32, PSBY photosystem II BY (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181900 [exp] 235 / 2e-79 AT1G67740 100 / 2e-26 photosystem II BY (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006243 [exp] 74 / 8e-17 AT1G67740 108 / 3e-30 photosystem II BY (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06298 [poplar] [flax] PsbY Photosystem II protein Y (PsbY)
Representative CDS sequence Show only first row Show all	>Potri.010G052000.1 pacid=42799348 polypeptide=Potri.010G052000.1.p locus=Potri.010G052000 ID=Potri.010G052000.1.v4.1 annot-version=v4.1 ATGGCAGCAACCATGGCAACAATGGCAATACTCAATGCCAAGTGCTTGAGCATCAACTCCAACAAGAATATCAGTCCCACCAAGCCATCAACAAAACCTG TCTCTCTTCTCTCCATGCAAAACCTCCCAAAAGGCCTAACCATCTCAAAACCAGCAGATAACACTGTCCTGACCGGTACTGCTATTGCCGGTGCTATCTT CACAACCTTGAGCTCATGTGAACCTGCTTTTGCTGCGCAACAAATCGCTGAAATAGCAGAAGGTGACAACCGTGGTCTAGCGCTCTTGCTACCACTCATA CCAGCCATAGCTTGGGTGCTTTTCAACATCCTCCAACCAGCACTTAACCAAATTAACCGCATGCGTCAGACCAAAGGGGTGATCGTTGGGCTTGGACTTG GTGGATTGGCTGCATCAGGTTTCATATCAACACCACACGCATCAGCTAGTGAGATTGCCATGATTGCTGATGCAACAAGTGACAACAGGGGTACTCTTCT GTTGATTGTCGTTGCTCCTGCTATTCTATGGGTGCTCTACAATATTCTACAACCGGCTTTGAACCAAATCAACAAGATGCGGTCTCAGTAA
AA sequence Show only first row Show all	>Potri.010G052000.1 pacid=42799348 polypeptide=Potri.010G052000.1.p locus=Potri.010G052000 ID=Potri.010G052000.1.v4.1 annot-version=v4.1 MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLI PAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLYNILQPALNQINKMRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	0	1	PSBY.2
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Potri.016G136100 [exp]	1.00	0.9861
AT3G61870			unknown protein		Potri.014G102400 [exp]	2.82	0.9846
AT3G12345			unknown protein		Potri.008G047800 [exp]	3.00	0.9846
AT3G12345			unknown protein		Potri.010G213600 [exp]	5.29	0.9834
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	5.91	0.9828
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.002G016401 [exp]	6.70	0.9761
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	6.92	0.9731
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	7.00	0.9802
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.007G128200 [exp]	7.21	0.9740	GUN4.2
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	7.34	0.9824

Compare expression of checked genes

Potri.010G052000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.