Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24480 326 / 9e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 302 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 120 / 3e-31 methyltransferases (.1) AT2G16030 110 / 1e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 85 / 7e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G53400 76 / 1e-15 unknown protein AT5G03190 56 / 6e-09 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088400 [exp] 328 / 2e-114 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G152100 [exp] 111 / 7e-30 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 103 / 7e-27 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 96 / 2e-22 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 92 / 4e-21 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G105100 [exp] 91 / 7e-21 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.006G128800 [exp] 77 / 7e-16 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 69 / 3e-13 AT3G53400 420 / 6e-144 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036941 [exp] 322 / 5e-112 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 318 / 2e-110 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 304 / 1e-104 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 217 / 2e-68 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10012217 [exp] 115 / 2e-29 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10039718 [exp] 110 / 4e-29 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001267 [exp] 113 / 1e-28 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10014232 [exp] 112 / 3e-28 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10018506 [exp] 105 / 2e-27 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022682 [exp] 93 / 2e-21 AT5G01710 698 / 0.0 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G052100.1 pacid=42797190 polypeptide=Potri.010G052100.1.p locus=Potri.010G052100 ID=Potri.010G052100.1.v4.1 annot-version=v4.1 ATGAAACCAAAACCACCCATGCTCGTATACTTCGTTATCTCCCTCATCCTCTCCCTCCCCCTCCTTTTCTTCTTCTTCTGCTTCAAAACCAACACCTACA CACCACCCGGAAACCCCAACTCTGACCTAAAGATCCGGCCCGGGTACACCACGTACAAAACCTACATACAACGTCAACTAAACAAGACCCTCAATCCAAA ACTGAGAAAAATATGGACAACCCGTGATTGGGACCGCAAAATCCAAGTCTTTGCTGACTTCTTCCAAGTTTTGAAACAAGAAAACCTTCTCTTCAACGAA TCCAAGGCCTTGTGTATCGGTGCCCGTGTAGGGCAAGAGGTCGAGGCCTTACGACGCATCGGCGTATCAGACTCCGTTGGTATGGACCTGGTGCCGTATC CACCCCTCGTTGTAGAGGGTGATTTCCATCGCCAGCCGTTCGATGATGGGACTTTTGACTTTGAGTTCTCAAACGTGTTTGATCACGCTCTGTTTCCGGA CAAGTTCGTTGGAGAGATCGAACGGACGTTGAAGCCTGGCGGGATATGTGTCTTACACGTGGCGCTTTCTAGAAGGGCTGATAAGTACTCGGCTAATGAT TTGTACAGTGTTAAACCGTTGGTTAATTTGTTTACGAATTCTAAGGTTGTTCGTGTCCGGAAAGTTGATGGGTTTGGGTTGGATACAGAAGTGGTGTTTA GGAAGATCGAAAAACAAGATCAGGAGATGATCCGAGGATCCCGATGA
AA sequence Show only first row Show all	>Potri.010G052100.1 pacid=42797190 polypeptide=Potri.010G052100.1.p locus=Potri.010G052100 ID=Potri.010G052100.1.v4.1 annot-version=v4.1 MKPKPPMLVYFVISLILSLPLLFFFFCFKTNTYTPPGNPNSDLKIRPGYTTYKTYIQRQLNKTLNPKLRKIWTTRDWDRKIQVFADFFQVLKQENLLFNE SKALCIGARVGQEVEALRRIGVSDSVGMDLVPYPPLVVEGDFHRQPFDDGTFDFEFSNVFDHALFPDKFVGEIERTLKPGGICVLHVALSRRADKYSAND LYSVKPLVNLFTNSKVVRVRKVDGFGLDTEVVFRKIEKQDQEMIRGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.010G052100 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	5.47	0.9094
AT5G27490			Integral membrane Yip1 family ...		Potri.005G033900 [exp]	9.53	0.9109
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	10.00	0.8977
AT3G13275			unknown protein		Potri.001G469401 [exp]	12.96	0.8961
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.003G173200 [exp]	13.85	0.8605	ASY1.1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	14.14	0.8973
AT3G21710			unknown protein		Potri.011G135700 [exp]	15.49	0.8797
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	18.38	0.8695
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	19.74	0.8807	MLO4.1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	22.97	0.8944

Compare expression of checked genes

Potri.010G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.