Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37190 96 / 1e-19 CIP4 COP1-interacting protein 4 (.1) AT4G00930 95 / 3e-19 CIP4.1 COP1-interacting protein 4.1 (.1) AT1G30060 84 / 3e-18 COP1-interacting protein-related (.1) AT2G01800 85 / 9e-18 COP1-interacting protein-related (.1.2.3) AT4G00580 85 / 2e-17 COP1-interacting protein-related (.1) AT4G00920 80 / 9e-16 COP1-interacting protein-related (.1) AT2G02770 77 / 3e-14 4'-phosphopantetheinyl transferase superfamily (.1) AT1G55860 67 / 9e-11 UPL1 ubiquitin-protein ligase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102500 [exp] 79 / 4e-15 AT1G55860 95 / 2e-20 ubiquitin-protein ligase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006453 [exp] 105 / 2e-22 AT5G37190 85 / 3e-16 COP1-interacting protein 4 (.1) Lus10011397 [exp] 104 / 2e-22 AT4G00930 83 / 8e-16 COP1-interacting protein 4.1 (.1) Lus10000702 [exp] 79 / 3e-15 AT2G01800 54 / 4e-08 COP1-interacting protein-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G052200.1 pacid=42798424 polypeptide=Potri.010G052200.1.p locus=Potri.010G052200 ID=Potri.010G052200.1.v4.1 annot-version=v4.1 ATGGCCGATTTCTACACTGTCTTCATAGACACCACTCTCGACACTCACCTCGCCTTCATTGTCTCCGCTTCCGACACTGTCTCCGACCTCAAGAAGAAAA TACTTCATGAACACAAGCTCTGTTTTCCGACCAACGGGGACATTAAAATTCATGCTTTGAAGGTAAAACGTCGAGGGATCTTGTACCATCTATCAGAATC CATGTTTGTAAAGAGTGCCTTTGATGGCACCGGTAAAAATTGGTTTGTTAGTGTTGATGCTTCTACTATAGAGGAGAATATTGACAACCTAGCAGCTCAG GTTGGTACCACAAACAATGGTTCAACTGACGAGGTTAACCTTCTCCCTGATAGCCATCCAAAAAGCTTGTTCAATGTTGTTGATTTATCCCTGCAGCTAG ATGAGAGTAGTCGGCTTGCAAAACAGAGGGCTTCTGTTGCTGAACAGCTAGGTTTGGATTTTGCTGGAAACGAAGAATTAAATAATTCAAGCATAGTTGC ATATAAAGGTGATTGTTACCGCAAGGTTATGTCACTGGCTGATGACAACAATGGGTCAAATCCTCCTATATTGGAGAAATATGATGAACCTGGCAAGGAA AAGGAAGTACAAGCAACACCAACTGGAAGTGTGGGAGGGGGTTCTGGGGATGGGATTGGTGATATGCAAGGCAGTGCACCATCAGATGGAGCTCTCACAA CAGGATCTGGTGCGAAGAAAAAGAATAAAAGGAAGAGGAAAAGTAAGGATATTACAGATGACCTCTCTGGAAAAGAAAAGGAGGCCTCAGGATGTCAATC TGGTGAAAATGAATCACAACAAGAGAGTGCTGCGAATAAAAGGCGTAAAATTGAGGAGGAAAACAGGGGTGATGGTTCTGTCAAGGAGAATGAAATTGTC CTTTCTGATTCTAATAAAGAGATATCCAAGCACCCTACAATCTCTCAGCACTATTTAGTAAACAATCAGAAAAATGCACACGCTGCTTTACACTGTTTAT CTTCTGAAACTTTGGACGGTCTCAGTTTGCTAGCAGCCTCTCAAGGCAGTGGGAAGGGGAACAAGAAAAAGAAATCTGTAAATCCTCTTAATCTAGAAAC TGCTGCTGTTCCTTCATCCACCGATGTTACAGGAGAGACCATGGAAGTTAACCCCAAGGATTTCAGCAAAGAGCCCGATACAGTACCTGTTCCTGTCCAG GGAGTAACAATTTCTGAGTCTTGCGCTGTCTCTGTGAAGGAAAAACACACAGATCCTGTCCAAGAAGATGGTAGACCCTCTTCACAAGGGATTGATATGA GTGACACGGATACTACCAATGCAAAAAGTAGACATGATGCCCCTGAACTAGCTGCTGCATCCGCTGCCAAAAAAAGGAGTCCAAAGAATACCATCCTTGA CGATAGTCAGAAACCTGCAACTGATCAGGTTGATGGTCTCGAAGAGGAAAGAGAGGCATTGCACCCCGGATCTATGCTACATGAGAAGTGCAAACCATCT GACATGAGATCTAAAGAAGCAGTTAATACTTCTGAATTGGTTGAAGCTAGTGAAACTGTATATCCTGGGACACATTCAAAGAAGAGAAAGAAATCTAAGA GGACAAGGGCTTTGTTGAGCACAACGCTAACATTAGGTACCGAAAATGTTAAAAGCTCCACAACTGCTGACGCTGCTTCAATTGAGCCTCATAAAGACGT GAATGGGGATGATTCCAATTATAAAGGTAATCAAGAGGATAGCAATTTGGCTGAAAAGGAAATGGAAGAAGTATCAGAAATGGATAAAGATGTGGCTGTC ACTTCTCAATTGGCTGGGGCTAGTGAAGCTGTGAATCCTGGGACACCATCAAAGAAAAAAAAGAAGTCTAAAAGGACGAGGGATTTGTTAAGCAGAACAC CAGGATCAGGTACAGAAAATGCAAATAGCTCTGCAGCTGCTGCCACTAGTTCAAACGACCACCATAAAGCTGCAAGTGGAGATGATTCCAAAGATAGAGT TAATCAAGAGGAAAGCAATTTGCATGCAAAGGAAGGGAAAGAAGTAGTGGAAAAGGATAAAGTTGTTGTCGCTTCTGAATTGGTTGAGGCTAGTGAAACT GTGAATCCTGGGACACCATCAAAGAAAAGAAAGAAGTCCAAAAGGACAACAGATTTGTTAATCAGAACACCAGCATCAGGTACAGAACATGTTAATATCT CTGCTGCTGCTGACGCTGCTTCAACTGAGCCTCATGAAGCTGTGAATGGGAATGATTCCACTGATAAAGTTAACCAGGAGGAAATCAATCTGCTGGCGAA GGAAGGGAAAGAGGTATCGGAAGTGGATAGAGAAGTAGTGGTCACTTCTGAGTTAGTTGAGGCTAGTGAAGCTGTGAATTGTGGGACACCATTAAAGAAA AGAAAGAAGTCCAAACGGACTAGGGATTTATTAAGCGGAACACCAACATCAGGTACAGAACCTAATAGTTCTGTGGCTGACACTTCTCCTACTGAGCGTC ATAATTCAGTGAATGGCGATGATTCCAATGATAATGGAAATAAAGAGGAAAACAGTATGGCTGCAAAGAAAGGGAAAGTGGTGTTAGAAATGGATGCAGC AAGTACTTTTCGTCTAGCTACTGATACAGAAATTGATGATGTGATTGAGAATGTAGTCAAATCTGCTGTCAATGGTTGTCCATCTAAAATTGATCATTCT GACAAAGCTGGTCATGGTATGGAAGTTTCCTGCAGAAGCGATAGGATCAACTTCAACGAGTACTTTGTGCCTAACCAAGACCTTGGCAAAACTGCTGCTT CTGGTGAGGTGCTTGTTGACAAAGCAACAAAAGCAAAACAAGTTGGTGGTATGAATTCTAACAAGAAGAAGAAGAAGCTAGATGCACTTTCTCGTGTTCC ATCATTTGATTTACATGGTTCATCAAGGTTAAATGTGAATGATGGAATTGGAGAAAAGCCTCCAGCTGGCGGGGTTAAAGTTCCACCATCTAGCAAGTCT GATAAGATCAGCTCCACTCCTGCAGAAGCTAGAAAATCTGGTGCTTTGGGGCTCGTTGTCACCAATACCTTTGCAAAGAACAACAAAGAACCCTCTGCTG CATCATATTCTAGCTTGGAAAGTTCTAGAAAAACAAGGGCTAGAGGGCATGGTTCAGATAAACAACACAATCAAACGAATGGTAGAGAAGTTTCCCCTGC TAATGTTGAGGGTGTTGTAAATAGTTCACAACGTAAAAAGAGCTTGATAGGAAAATCGGGCACAATATTCCAGGATGATAATTATGAGCATTCTGCAGAG GATAGAACTGAGAGTTCAGATTCCAGCACTAGAACTCCTTCAGATAATTCATTGTCTTCTGACTACTCAGACGGAGAAAGCAATTCAGATTTTAACTCAT CTCAAAATGGATATTACTGCTTGAAAAGCAAGGAAGGTGGTGGAAAGAACATCAAAAAACCACTTTCAGGCCTGACCTTGGAGAAAATCCTTAGAAGTTC AAGCAGATATAAAAAGGCCAAGCTAACAGCTTCCCAGTCGCAGCTCGAGGACACTGAAAATGAGCCTGTTGATTTTGTTCCAGACAGCCAAGCAAACCCT TGA
AA sequence Show only first row Show all	>Potri.010G052200.1 pacid=42798424 polypeptide=Potri.010G052200.1.p locus=Potri.010G052200 ID=Potri.010G052200.1.v4.1 annot-version=v4.1 MADFYTVFIDTTLDTHLAFIVSASDTVSDLKKKILHEHKLCFPTNGDIKIHALKVKRRGILYHLSESMFVKSAFDGTGKNWFVSVDASTIEENIDNLAAQ VGTTNNGSTDEVNLLPDSHPKSLFNVVDLSLQLDESSRLAKQRASVAEQLGLDFAGNEELNNSSIVAYKGDCYRKVMSLADDNNGSNPPILEKYDEPGKE KEVQATPTGSVGGGSGDGIGDMQGSAPSDGALTTGSGAKKKNKRKRKSKDITDDLSGKEKEASGCQSGENESQQESAANKRRKIEEENRGDGSVKENEIV LSDSNKEISKHPTISQHYLVNNQKNAHAALHCLSSETLDGLSLLAASQGSGKGNKKKKSVNPLNLETAAVPSSTDVTGETMEVNPKDFSKEPDTVPVPVQ GVTISESCAVSVKEKHTDPVQEDGRPSSQGIDMSDTDTTNAKSRHDAPELAAASAAKKRSPKNTILDDSQKPATDQVDGLEEEREALHPGSMLHEKCKPS DMRSKEAVNTSELVEASETVYPGTHSKKRKKSKRTRALLSTTLTLGTENVKSSTTADAASIEPHKDVNGDDSNYKGNQEDSNLAEKEMEEVSEMDKDVAV TSQLAGASEAVNPGTPSKKKKKSKRTRDLLSRTPGSGTENANSSAAAATSSNDHHKAASGDDSKDRVNQEESNLHAKEGKEVVEKDKVVVASELVEASET VNPGTPSKKRKKSKRTTDLLIRTPASGTEHVNISAAADAASTEPHEAVNGNDSTDKVNQEEINLLAKEGKEVSEVDREVVVTSELVEASEAVNCGTPLKK RKKSKRTRDLLSGTPTSGTEPNSSVADTSPTERHNSVNGDDSNDNGNKEENSMAAKKGKVVLEMDAASTFRLATDTEIDDVIENVVKSAVNGCPSKIDHS DKAGHGMEVSCRSDRINFNEYFVPNQDLGKTAASGEVLVDKATKAKQVGGMNSNKKKKKLDALSRVPSFDLHGSSRLNVNDGIGEKPPAGGVKVPPSSKS DKISSTPAEARKSGALGLVVTNTFAKNNKEPSAASYSSLESSRKTRARGHGSDKQHNQTNGREVSPANVEGVVNSSQRKKSLIGKSGTIFQDDNYEHSAE DRTESSDSSTRTPSDNSLSSDYSDGESNSDFNSSQNGYYCLKSKEGGGKNIKKPLSGLTLEKILRSSSRYKKAKLTASQSQLEDTENEPVDFVPDSQANP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Potri.010G052200 [exp]	0	1	CIP4.1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G171800 [exp]	1.00	0.8292
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	2.44	0.7968
AT5G25280			serine-rich protein-related (....		Potri.006G258600 [exp]	11.31	0.7495
AT1G49520			SWIB complex BAF60b domain-con...		Potri.009G106700 [exp]	12.32	0.7996
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	12.80	0.7837
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	22.75	0.7708
					Potri.001G426260 [exp]	23.87	0.7732
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	27.60	0.7710
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.003G203600 [exp]	31.12	0.6971
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	32.86	0.6587

Compare expression of checked genes

Potri.010G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.