Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67730 449 / 5e-160 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 311 / 8e-106 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT5G10050 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 78 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 75 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 76 / 3e-15 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 73 / 2e-14 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT1G49670 73 / 5e-14 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT1G10310 70 / 9e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 69 / 1e-13 SAG13 senescence-associated gene 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181700 [exp] 555 / 0 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.008G181600 [exp] 379 / 3e-132 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.010G052500 [exp] 371 / 3e-129 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.010G052400 [exp] 314 / 1e-106 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.013G084100 [exp] 78 / 3e-16 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G035200 [exp] 75 / 3e-15 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G103000 [exp] 76 / 4e-15 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.007G086600 [exp] 72 / 6e-14 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G048800 [exp] 72 / 6e-14 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006248 [exp] 493 / 3e-177 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10036940 [exp] 492 / 7e-177 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1) Lus10011396 [exp] 320 / 4e-109 AT1G24470 357 / 7e-124 beta-ketoacyl reductase 2 (.1) Lus10006249 [exp] 215 / 2e-69 AT1G67730 212 / 2e-68 beta-ketoacyl reductase 1 (.1) Lus10026851 [exp] 81 / 3e-17 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 77 / 5e-16 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 73 / 2e-14 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 72 / 3e-14 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 73 / 5e-14 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 71 / 8e-14 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.010G052300.1 pacid=42799907 polypeptide=Potri.010G052300.1.p locus=Potri.010G052300 ID=Potri.010G052300.1.v4.1 annot-version=v4.1 ATGAGTCTCTGTTTCGTTGACGATCTCAAGTCTCAGCCTTCATGGCTTCTTGTGCTCTTCACTCTGGGTTCTCTTTCATTTCTGAAGTTCCTTTTCGCTT CTCTCAAATGGGTCTACGTTAGTTTCCTCAGACCTGCCAAGAATCTCAAGAAATACGGATCATGGGCTCTCGTTACTGGACCCACTGACGGTATTGGCAA AGGATTCGCTTTCCAATTGGCTCGAAAGGGTCTCAATTTAATCTTGGTGGGCAGAAATCCCGATAAACTCAAAGATGTGTCGACTTCAATTCAATCCAAA TACAGTAATGTCCAAATCAAGAACGTTGTTGTTGATTTCAGTGGCGATATTGACGAGGGTGTTCAAAAGATTAAGGAGACTGTTGAAGGTCTGGATGTTG GTATCTTGATTAATAATGTCGGGGTTTCTTATCCTTATGCCAGGTTCTTTCATGAGGTTGACGAGGAGCTGTTGAAGCATTTGATTAGAGTGAATGTTGA AGGTACTACTAAAGTTACACAAGCTGTTCTGCCTGGGATGTTGAAGAGGAAGAAGGGTGCTATTGTTAATATTGGTTCTGGAGCTGCCATTGTAATCCCT TCTGATCCTCTTTATGCTGTTTATGCTGCTACTAAAGCGTACATCGATCAATTCTCAAGGTGCCTTTATGTTGAATACAAGAAAAGTGGGATTGATGTGC AGTGTCAGGTTCCCCTTTACGTTGCAACAAAGATGGCATCAATAAAGAGATCTTCCTTTTGGGTTCCTTCATCAGACAGTTATGCCCGGGCAGGTCTGCG TGCTATAGGCTATGAACCTCGCTGCACACCTTACTGGCCCCATTCCCTTCTTTGGGGTTTGATACAATTGTTGCCAGAATCAGCTGTTGATTCCTGGCGA CTAGGTTTTTGCCTTAGGATTCGAAAGAGAGGACAGCTTAAAGATTCTAGAAAGAATGAATGA
AA sequence Show only first row Show all	>Potri.010G052300.1 pacid=42799907 polypeptide=Potri.010G052300.1.p locus=Potri.010G052300 ID=Potri.010G052300.1.v4.1 annot-version=v4.1 MSLCFVDDLKSQPSWLLVLFTLGSLSFLKFLFASLKWVYVSFLRPAKNLKKYGSWALVTGPTDGIGKGFAFQLARKGLNLILVGRNPDKLKDVSTSIQSK YSNVQIKNVVVDFSGDIDEGVQKIKETVEGLDVGILINNVGVSYPYARFFHEVDEELLKHLIRVNVEGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIP SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFWVPSSDSYARAGLRAIGYEPRCTPYWPHSLLWGLIQLLPESAVDSWR LGFCLRIRKRGQLKDSRKNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	8.94	0.8770
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	12.84	0.8681
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	13.96	0.8623
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Potri.007G010900 [exp]	15.81	0.9067
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G133300 [exp]	17.83	0.8910	Pt-UF3.2
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	31.12	0.8533
AT3G60470			Plant protein of unknown funct...		Potri.005G008350 [exp]	37.46	0.8848
AT2G44930			Plant protein of unknown funct...		Potri.005G008500 [exp]	42.66	0.8842
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	58.58	0.8334
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	66.48	0.7965

Compare expression of checked genes

Potri.010G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.