Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67730 321 / 2e-109 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 270 / 2e-89 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT5G10050 77 / 5e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 77 / 9e-16 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 76 / 1e-15 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G65205 73 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 72 / 8e-14 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 72 / 8e-14 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT1G49670 66 / 1e-11 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G50690 63 / 3e-11 ATHSD7 hydroxysteroid dehydrogenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052300 [exp] 318 / 2e-108 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.008G181700 [exp] 309 / 1e-104 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.008G181600 [exp] 306 / 1e-103 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.010G052500 [exp] 298 / 2e-100 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.016G048800 [exp] 72 / 6e-14 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.013G026000 [exp] 66 / 3e-12 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G056100 [exp] 66 / 4e-12 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 66 / 5e-12 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.008G178700 [exp] 65 / 1e-11 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006248 [exp] 303 / 4e-102 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10036940 [exp] 300 / 8e-101 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1) Lus10011396 [exp] 267 / 4e-88 AT1G24470 357 / 7e-124 beta-ketoacyl reductase 2 (.1) Lus10006249 [exp] 223 / 1e-72 AT1G67730 212 / 2e-68 beta-ketoacyl reductase 1 (.1) Lus10016430 [exp] 74 / 7e-15 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 72 / 3e-14 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 70 / 2e-13 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 69 / 7e-13 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 67 / 2e-12 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 63 / 3e-11 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.010G052400.1 pacid=42797983 polypeptide=Potri.010G052400.1.p locus=Potri.010G052400 ID=Potri.010G052400.1.v4.1 annot-version=v4.1 ATGGAGTTACAAGCTGTTTTCCTGGTAGCAGTGAGTTGTCTGGGTTTTGTTTCTCTTTGCAAGCATATCTTCTGTTTTCTCAAGTGGATATGGGACATGT TCTTGAGACCACCAAAGAATTTGAAGGAGTATGGCTCTTGGGCTATAATCACTGGCTCCACCGACGGGATAGGCAAAGCCCTTGCTTTCGAGCTAGCATC GAAGGGTCTTAACCTTGTTCTTGTTGGTCGAAACCCTTCAAAACTTGAAGCTACATCAAATGAAATACGGGCAAGATTTGGTGATCAGCAAGTAGACATA AAAAATGTTGTGGCTGACTTTGCAACATTGAGCGGACCGGAGATATCAAAGGCAATGGAGGGAAGTATTAAAGAGTTGGATGTTGGTGTTCTGATAAACA ACGCTGGAGTTTCATACCCTAATGCTCGGTTCTTTCATGAGGTTGACTGGAAGATGACGGAGAGTCTTATCAAGGTGAATTCAGAGGCAGCAACTTGGGT CACTAGGGCAGTGCTTCCTGCTATGTTAAAGAAGAAAAAAGGTGCAATAGTCAATATGGGCTCTGGCTCCGTCGCCGTCCTTCCTTCATTCCCATTGTTC GCCATTTATGCCTCAACCAAAGCGTACCTTGGAATGTTTTCAAGATGCATCAATTTGGAGTATAAGCATCATGGAATTGACATTCAATGCCAGGTACCAC TTTTTGTGGCAACGAAGATGACGAAGTTCAAAAAATCTCTTTTCTTGATTGCATCACCGGAAATGTACGCCAAAGCAAGCATAAGATGCATTGGCTATGA GCATCTGAGCATGCCACTTTGCTCGCACTCTGTGCAAAGGTTTATCGTAGACGCATTGCCTAATGCACTACTAGATTGGTGCACTTACCATTTTTTTCTT CGGCTTCGCCGGAAGAGATTGGAGAAGGAATCCTTGAGAGCTAAGGGTCGAGCAGCAGCACAAACTTAA
AA sequence Show only first row Show all	>Potri.010G052400.1 pacid=42797983 polypeptide=Potri.010G052400.1.p locus=Potri.010G052400 ID=Potri.010G052400.1.v4.1 annot-version=v4.1 MELQAVFLVAVSCLGFVSLCKHIFCFLKWIWDMFLRPPKNLKEYGSWAIITGSTDGIGKALAFELASKGLNLVLVGRNPSKLEATSNEIRARFGDQQVDI KNVVADFATLSGPEISKAMEGSIKELDVGVLINNAGVSYPNARFFHEVDWKMTESLIKVNSEAATWVTRAVLPAMLKKKKGAIVNMGSGSVAVLPSFPLF AIYASTKAYLGMFSRCINLEYKHHGIDIQCQVPLFVATKMTKFKKSLFLIASPEMYAKASIRCIGYEHLSMPLCSHSVQRFIVDALPNALLDWCTYHFFL RLRRKRLEKESLRAKGRAAAQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	0	1
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	1.00	0.8865
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.011G055500 [exp]	2.00	0.8694
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	3.16	0.8759
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Potri.014G145700 [exp]	4.58	0.8740
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	7.14	0.7584
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	12.64	0.8389
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	13.41	0.8195
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	16.97	0.8032
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	17.17	0.7507	PAN.2
AT5G67390			unknown protein		Potri.007G053300 [exp]	22.24	0.7773

Compare expression of checked genes

Potri.010G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.