Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 1116 / 0 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT4G31570 85 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008600 [exp] 125 / 2e-28 AT4G31570 1464 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006252 [exp] 1621 / 0 AT1G24460 937 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10006450 [exp] 1466 / 0 AT1G24460 902 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10036938 [exp] 1456 / 0 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10011393 [exp] 628 / 0 AT1G24460 375 / 7e-112 TGN-localized SYP41 interacting protein, unknown protein Lus10011394 [exp] 618 / 0 AT1G24460 415 / 3e-126 TGN-localized SYP41 interacting protein, unknown protein Lus10026934 [exp] 124 / 1e-27 AT4G31570 680 / 0.0 unknown protein Lus10020133 [exp] 123 / 2e-27 AT4G31570 1315 / 0.0 unknown protein Lus10009250 [exp] 0 / 1 AT1G24460 80 / 1e-21 TGN-localized SYP41 interacting protein, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G052600.1 pacid=42797590 polypeptide=Potri.010G052600.1.p locus=Potri.010G052600 ID=Potri.010G052600.1.v4.1 annot-version=v4.1 ATGTCAGAATCAAAGGAGCAAAATGGAGTGACAGCAGCGGAAGATGAAGAATCAAATGGAGTTGATGCTGCTCATACCAACCAGGAAGGAGGAGAGATGC GGCATGTTGAAAGCAAAGAAGATATGTTCGAAGATGCAACTGATGATATTGAAGAGAATCAGTTTCAAGAAATTGTCGATGATGCTACTCTACTACAAGA ACATGCTACTTCTTCTCCTTCTATTGATGAATTAAAAGCAATCCTTGACAAGACTCTTCAAGAAAAACAGACCCTCTCTACTGAATTAAAGGAAGAAAGG GAAAGCATCGCGAGAGAAGTTTCTATTCTATGCCATGAGCTTAAGGGTTTGGCGGATAAACAGTCTTTGTCTGCTGATTATGGAAATCAGGAGGAAATGG TGGCCGGTAATGATACTTCCTTATTGCGTGAGATGTTAAGTGAGTGCTCTCAGTTTGTCAAGGTTGCATTGGATGAGCGCTTACGGACTGAGGGGGTGAT AAGAGAGCTGAATCAACAGATCGAGGATCTTACAGTGAAGGCTCAGGCGGAAGAGGGTGTTGAGGTTGTTGCAGACAGGCTGTTGGCTTCACTTGGCGTG GTGGTTAATCCTGGAGAGTTGTTGGATTATTCAGTTATGGGGAAACTGGCTCATGTTGAGAGAAGTGGCTCTTTGTTAGTTGAGCATTATAGCTGGATGC TCTATGAAATTGATCAGCTTAGGGCGTGTTTAACTGAGGGAGGGTTTAATTTTGAGGGGCAGGAGCTGTTTGGGCCTGCATTGGTTTTTGCTGCTGCCCG TGGTGAGTTGGTGGAGCTCAAGAGAAAGGAAGTAGAGATGGTGGAAAAACTAGGCCATTTAGAGGATGAAAGTAGGAAATTGGTTGAACAGGTTGAGAAG GAAAAAATGATGGCAGAGGCAGCAAATGTAGAACTTGGAAGAATGAAGGTGGAACTTGAGCAGGAAAAGAACAGGTTTGCAAATACAAAGGATAAGCTTA GCATGGCCGTGACCAAGGGAAAGGCATTGGTTCAGCAACGGGATTCACTAAAGCATGCTCTGGCTGAGAAAACAAGTGAGCTTGACAAATGTCTGGCTGA ATTGCAAGAGAAATCAAGTGCCATTGAGACCGCAGAGCTATTTAAGGGCGAGTTGGTCAAATGTGAGAACTTGGTGGCATCATTGCAGGAAACGCTTGCA CAAAGAAATGCAGTTTCGGAAAGCTTGGAAGTAGTTTTTTCTCAGATTGATGTACATGAGGGACTTCAAACGATGGATGTTGTAGAGAAATTGAAATGGT TAGTAAATGAGGTTACATCACTGCAGGGAATGCTTTCAGAAAAGAATGCAATTTTTGAGAACTTTGAAGAAATTCTGTCGCACAATAATGTTCCCAAGGA GGAAACAGATCTTATTGAGAAGTTGAGATGGCATGTGAATTTGACTTCGTCACTCGAGGAAACTCTTTCACAAAGGAATAAAATTATTGACTATCTTGAA GAAAGTTTTTCTCAGATAAGTGTGCCTGTGGAACTTCAGTCAGTGGATACTGTTGAAAAGTTGAAATGGCTTGTCGAGGAGAGAAATGCACTTAAGGATA ATTTGCTGGAATTCCACAAATTGAAAGATGCCTTGTCTTTAATTGACCTACCTGAAACTGCTTCATCCTCTGACTTGAAAACTCGAATAGGTTGGCTCAA GGAATCAGTTAACCAATCAAAAGGTGAAATAAATGAGTTGCGGGAAGAACTTGCTAGAACAAAGACATCTGCACAAAATGAGATTGACCAGTTAAGTGCT TTGCTTTCAGCAGAGTTACAAGAAAAGGAATATATTAAAATGGAGTTGGATGTCTTAGAACGCAACTTTGAAGAGGTCCATCAAGCCTCATCCGAAAAGC ATCAGATGGTGCAGATGTTGTTAGAGCGTTCTGGAATAACAACAGACAGTCTTGAACCCAATCAGACTTATTCTGATCTGCCCATGCTTGTCGATAGATG CTTTGGGAAGATAAAAGAAGAAAGCAATTCTTCTTCTGACACTTCTGCTGTTGCTGAAGTGTTCGAAAGTATGCAGAGTCTCTTGTATGTCAGGGATCAG GAGTTGATGCTTTGTGAGAAACTTCTTGAAGAAGACATGCTGGTGAGATCAGAGGTGATTAATCTGTCCGGTGAGCTAAAAGTGGCATCTCTAGGACTTT CTGCATTGAAGGAGGAAAAAGACACCCTGCAGAAAGATCTTGAGCGTACGGAGGAGAAATCTACTTTACTGAGGGAGAAGTTGTCCTTGGCAGTTAAGAA AGGCAAGGGATTGGTTCAAGATAGAGAAAACCTGAAACTTCTCGTGGAAGAGAAGAAATCAGAAGTTGAGAATTTCAAACTCGAGTTACAGAAGCAAGAA TCTATGGTTACTGACTGCAGGGATGAGATAAATAGATTGTCTGCTGATTTAGAGCAAATCCCAAAGTTGGAGGCTGATCTTGTTGCTGCCAAAGATCAAC GTAATCAACTTGAGCAATTCTTATTGGAGAGCAATAACATGTTACAGAGAGTTATCGAATCCATTGATGGTATTGTTCTTCCTGTTGCTTCTGATTTTGA AGAGCCTGTACAAAAGGTGAACTGGCTTGCAGGGTACTTGAATGAATGCCAGCAGGCTAAGATCCACATGGAGCAAGATTTGGAAAAAGTTAAGGAAGAA ACTAATATTCTGGCTAGTGAGTTAGCAGATGCCCAACGAGCAATGAAATCACTTGAAGATGCATTATCAGCTGCAGAGAACCAAATCTCTCAACTATCTG AAGAGAAAGGGGAAATGGAAGTTGCAAAAAGAACTGTTGAACTGGACCTGCAAAAGGCAATAGATGAAACAACTAGTCAAACTAGCAAGTTTACTGAGGC TTGTGCGACTATAAAATCACTTGAAGATTCATTGTCACTAGCAGAAAATAATATTTCTATGATCACCAAAGAGAGAGAAGAGGTCCAACTGAGCAGAGCT TCTACCGAGGCTGAACTAGAGAAACTAAGAGAAGATATCACCATTCAAACTAGCAAACTTACTGAGACATTTAGAACTGTAAAGGCTCTTGAAGATGCAC TGTCTCAGGCAGAGACCAATGTTTCTTTGCTGACTGAACAAAACAATCGTTTCCACGATGACAGATCCAATTTGGAGAGCGAGCTAAAGAAGTTAACAGA AGAAGCTGATTCCCAGACTGGCAAACTGACATCTGCCTTGTCAACTATAAAATCACTGGAGGATGCATTGTCGAAGGCGTCAAATGATATTGCTGTGCTA GAAGATGAAAAGAAGATTTCCCAGCAGAAGATTTCTATGCTTAACTCTAGGTTGAACACATGCATGGATGAATTAGCTGGAACCAGCGGCAGCTTAGAAA GCAGGTCTGTGGAGCTCATGCATCACCTTGGTGATCTTCAAATTATTATGAAAAATGAGAGTTTATGGTCCATGGTCAGACAACATTTTGAGAAGCAGTT TGAGAGCTTGAAAAATATTGATCTCATTCTCAATGACATAACAGTACACTTCGTTGACACAGATCTGGAAGCACTGAAAAGTTACTATGTGATGGAGGAA GATTCGTGTGTGACAAAACCTTTTCCATATGACCTTGGCAATAGGGTGAACAGTGGAATTGTTAACGGTCAGGTGAATGCAGTGGATGTTGATAACATTC CCTTGTATTTTAAGGAGACTGTTGAAGAGTTTCAGTTGAGAAACAAAAATCTTGCAGAAAATTTTGAAGGTTTCTCAATTTTCACAAATGAATTTATTGA AGCACTATTGAGAAAATTAAGGATAAGCAGGGATGCTGTAAGTTCTGTTTTTGAAAACATGGGGTCTTTGAAAGAAAAAATGAAGAATTTGGAACTGCTT AAAGAGGAACATGAGAAAACCATAGCCAAATTAGAACAAGATCAAAAACTTTTGCTATCTGCTTGTACTAATGCCACTAGAGAACTGCAGTTTGAAGTTA CGAACAAGCTACTGGAACTAAGCTCTATTCCTGAGCTTGAAAAGTTGAACTGTAATCCCATTCAAGAAGCAAGTGAAGCTGGTGCAGAGGACACAGAGCA TCAGCAAAGGCTTGATGAAAGAGAATATGCCATGATAGCAGAGAAGTTGTCATTAGCTGCAACAAGAGTGCAAAATCTGGCTAAACTGTTTGAGAGTTCA AGTAATGTGGCAGCTGCAACAATAGAAGACTTGCAGAACAAATTGGTGGAAAGCACAGCAACTTCAGAAAAAGCCACAGAAAAATGCGTTATACTAAAAA ATAGGGTTTTGGAGTTTGAGACTGATGTCGAAGCATTACAAAATTCATGCAAAGAGTTGAGACTCAAAATAAAAGACTACCAAGCTATGGAGGAAAAGTT GATGGAACAGGAAGCTGAACTGTCAGCTTTACAAGGTAATCTGTTGGTGAAAGATCAAGAGGCCGAAGAACCTCTCATGTCTGCATCGCAATTGAAAACC CTTTTTGAGAAGATAAGTATAATTGAAATTCCTTTTGAAGATTCAGAAGTAGGAGGTTTGGAACCTCATAGTTCAGTTGATGTAAAGAAATTGTTTTACA TTGTTGATAGCATAAGTGATTTGCATAACCAATTAAATACATTATCTCATGACAAAGAAGAGCTACAATCAACGCTGTCAACAAGGATTCTTGAAATTGA GAATCTGAAAGAGGAAACTGAAACCCAATTTAGAAATAGGCAAGACTACGAAAAGATGAAGAATGAAATGTCTGAGCTATTCTTTGGTTTAGAGAAGCTT ATTGATATATTTGGAGATCATGGATTTGTTGGGGAACAAAAATCCTCCGGTGAGCAGGGATTGCTGCCAGCGTTGGAAAAACAGATCATGGCCCTGCTCC TGGAAGTTGATAATTCAAATTCCCATGCTGAGGAACTTGATATAAAGTTACTTGGGAGCCAGAAAATTATAGATGAATTGTCATCCAAGATTAAAGTGCT TGAAGATTCACTTCAAAGTAGAGCTGCTAAGCCAGAGATTGTTCAGGAAAGGAGCATCTTTGAGGCACCTCCACCTGCTGTCTCAGAAATATCTGAAATT GAAGATGCGGGACCAGTTGGAAAGAATGGAATATCTCCTGTTGCCTCATCTACTGCCTCAGCTGCTCATGTGCGAACTATGCGAAAAGGATCAACCGACC ATCTTGCACTCAATGTTGATCTGGAATCTGGTAGTCTGATCAACCACGAGGAAACTGATGAGGACAAAGGTCATGTTTTCAAGTCTCTTAACACATCAGG TCTCATTCCGAAACAAGGAAAGTCAGCTGCAGATCGAATCGACAGCATATGGGTATCTGGCGGCCGAGTACTAATGAGCCGTCCCAGGGCGAGGCTAGGC CTTATTGCCTATTGGCTTTTCTTGCATATATGGCTTTTGGGAACCATTTTGTGA
AA sequence Show only first row Show all	>Potri.010G052600.1 pacid=42797590 polypeptide=Potri.010G052600.1.p locus=Potri.010G052600 ID=Potri.010G052600.1.v4.1 annot-version=v4.1 MSESKEQNGVTAAEDEESNGVDAAHTNQEGGEMRHVESKEDMFEDATDDIEENQFQEIVDDATLLQEHATSSPSIDELKAILDKTLQEKQTLSTELKEER ESIAREVSILCHELKGLADKQSLSADYGNQEEMVAGNDTSLLREMLSECSQFVKVALDERLRTEGVIRELNQQIEDLTVKAQAEEGVEVVADRLLASLGV VVNPGELLDYSVMGKLAHVERSGSLLVEHYSWMLYEIDQLRACLTEGGFNFEGQELFGPALVFAAARGELVELKRKEVEMVEKLGHLEDESRKLVEQVEK EKMMAEAANVELGRMKVELEQEKNRFANTKDKLSMAVTKGKALVQQRDSLKHALAEKTSELDKCLAELQEKSSAIETAELFKGELVKCENLVASLQETLA QRNAVSESLEVVFSQIDVHEGLQTMDVVEKLKWLVNEVTSLQGMLSEKNAIFENFEEILSHNNVPKEETDLIEKLRWHVNLTSSLEETLSQRNKIIDYLE ESFSQISVPVELQSVDTVEKLKWLVEERNALKDNLLEFHKLKDALSLIDLPETASSSDLKTRIGWLKESVNQSKGEINELREELARTKTSAQNEIDQLSA LLSAELQEKEYIKMELDVLERNFEEVHQASSEKHQMVQMLLERSGITTDSLEPNQTYSDLPMLVDRCFGKIKEESNSSSDTSAVAEVFESMQSLLYVRDQ ELMLCEKLLEEDMLVRSEVINLSGELKVASLGLSALKEEKDTLQKDLERTEEKSTLLREKLSLAVKKGKGLVQDRENLKLLVEEKKSEVENFKLELQKQE SMVTDCRDEINRLSADLEQIPKLEADLVAAKDQRNQLEQFLLESNNMLQRVIESIDGIVLPVASDFEEPVQKVNWLAGYLNECQQAKIHMEQDLEKVKEE TNILASELADAQRAMKSLEDALSAAENQISQLSEEKGEMEVAKRTVELDLQKAIDETTSQTSKFTEACATIKSLEDSLSLAENNISMITKEREEVQLSRA STEAELEKLREDITIQTSKLTETFRTVKALEDALSQAETNVSLLTEQNNRFHDDRSNLESELKKLTEEADSQTGKLTSALSTIKSLEDALSKASNDIAVL EDEKKISQQKISMLNSRLNTCMDELAGTSGSLESRSVELMHHLGDLQIIMKNESLWSMVRQHFEKQFESLKNIDLILNDITVHFVDTDLEALKSYYVMEE DSCVTKPFPYDLGNRVNSGIVNGQVNAVDVDNIPLYFKETVEEFQLRNKNLAENFEGFSIFTNEFIEALLRKLRISRDAVSSVFENMGSLKEKMKNLELL KEEHEKTIAKLEQDQKLLLSACTNATRELQFEVTNKLLELSSIPELEKLNCNPIQEASEAGAEDTEHQQRLDEREYAMIAEKLSLAATRVQNLAKLFESS SNVAAATIEDLQNKLVESTATSEKATEKCVILKNRVLEFETDVEALQNSCKELRLKIKDYQAMEEKLMEQEAELSALQGNLLVKDQEAEEPLMSASQLKT LFEKISIIEIPFEDSEVGGLEPHSSVDVKKLFYIVDSISDLHNQLNTLSHDKEELQSTLSTRILEIENLKEETETQFRNRQDYEKMKNEMSELFFGLEKL IDIFGDHGFVGEQKSSGEQGLLPALEKQIMALLLEVDNSNSHAEELDIKLLGSQKIIDELSSKIKVLEDSLQSRAAKPEIVQERSIFEAPPPAVSEISEI EDAGPVGKNGISPVASSTASAAHVRTMRKGSTDHLALNVDLESGSLINHEETDEDKGHVFKSLNTSGLIPKQGKSAADRIDSIWVSGGRVLMSRPRARLG LIAYWLFLHIWLLGTIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	1.73	0.8022
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	2.00	0.8444
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	3.74	0.7896
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	4.24	0.8274	MOR2,Pt-MOR1.2
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	4.89	0.7948
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	5.29	0.7618	ALA3.3
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	8.00	0.7885
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.010G169100 [exp]	8.66	0.7245
AT3G58050			unknown protein		Potri.016G060200 [exp]	11.61	0.7582
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	14.49	0.7939

Compare expression of checked genes

Potri.010G052600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.