Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 350 / 8e-123 RING/U-box superfamily protein (.1) AT1G13195 336 / 3e-117 RING/U-box superfamily protein (.1.2) AT5G01520 227 / 2e-74 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 219 / 1e-71 RING/U-box superfamily protein (.1.2) AT5G58787 204 / 1e-65 RING/U-box superfamily protein (.1.2) AT4G35840 45 / 2e-05 RING/U-box superfamily protein (.1) AT2G17730 45 / 2e-05 NIP2 NEP-interacting protein 2 (.1.2) AT3G48030 44 / 4e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G20030 44 / 9e-05 RING/U-box superfamily protein (.1) AT5G05130 43 / 0.0002 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181300 [exp] 464 / 3e-168 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 349 / 1e-122 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 329 / 1e-114 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 249 / 5e-83 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 242 / 2e-80 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 238 / 1e-78 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 231 / 4e-76 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 227 / 2e-74 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 226 / 4e-74 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006253 [exp] 397 / 2e-141 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 392 / 3e-139 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006448 [exp] 351 / 1e-123 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10011391 [exp] 345 / 3e-121 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10011390 [exp] 239 / 3e-79 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 236 / 3e-78 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 234 / 2e-77 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 232 / 2e-76 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 225 / 6e-74 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 223 / 4e-73 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.010G052700.1 pacid=42800144 polypeptide=Potri.010G052700.1.p locus=Potri.010G052700 ID=Potri.010G052700.1.v4.1 annot-version=v4.1 ATGGAGATGATGTGTTATCAGCTGAGCAACTCATCTTACCAAGATTCCCTTAAAGTTTTGGAGGCTGATATCCAGCATGCTAATGCTTTGGCTGCTGCAA TTCCAAAGGACAAGGGTGGAGCACGCCTGCGGATGAAATTAGCTTACAATCACTGGGCTCCTCTCTTTTTCTTTCTGCTACAAAGAATAGATTGTTCTTA TTTTTGCCTGCTCCCCAGATATCTAAATTTCTTTCATGTACTAGTATATAAGGTGTATACTGATGGTAGACCAGGCCTATCTAAGCATGGAAGGAAAGCA ACAGTTCAGGAATTCTATGGTGTTATATTGCCGTATCTTCAACGGCTTAATAGTAACTTAGAAGAGATGGGGGATGTTAAGGGAGAGAATTATGGCATGG AGAGTTTGGGCAAAAAGAAGGTGGAAGGAGATAACAGGCTTGCCAATATTGATTTAGAGAGGGAAGATGAATGTGGAATTTGTTTGGAGCCCTGCACCAA AATGGTCTTGCCTAACTGTTGTCATGCAATGTGCATCAAATGCTACCGCAATTGGAACACAAGGTCGGAGTCCTGCCCTTTTTGCCGTGGCAGCTTAAAG AGAGTTAACTCGGAAGACTTGTGGGTTCTCACTTGTAACAGTGAAGTTGTTGACACAAAAGCGATTTCCAAAGAGGATTTGTTGCGGTTCTACCTCTACA TCAACAGCTTGCCAAAAGATTATCCTGATGCTCTTTTCTTAGTGTATTATGAGTACCTAATATGA
AA sequence Show only first row Show all	>Potri.010G052700.1 pacid=42800144 polypeptide=Potri.010G052700.1.p locus=Potri.010G052700 ID=Potri.010G052700.1.v4.1 annot-version=v4.1 MEMMCYQLSNSSYQDSLKVLEADIQHANALAAAIPKDKGGARLRMKLAYNHWAPLFFFLLQRIDCSYFCLLPRYLNFFHVLVYKVYTDGRPGLSKHGRKA TVQEFYGVILPYLQRLNSNLEEMGDVKGENYGMESLGKKKVEGDNRLANIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFCRGSLK RVNSEDLWVLTCNSEVVDTKAISKEDLLRFYLYINSLPKDYPDALFLVYYEYLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	0	1
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G134900 [exp]	3.60	0.8332	NAD-SDH.1
AT4G10170			SNARE-like superfamily protein...		Potri.003G048600 [exp]	4.47	0.7729
AT1G24440			RING/U-box superfamily protein...		Potri.008G181300 [exp]	5.00	0.7896
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	6.32	0.8252
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.014G001100 [exp]	8.83	0.7825
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.008G186500 [exp]	10.39	0.7471
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Potri.002G202300 [exp]	12.00	0.7716	SUS2.2
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	12.12	0.8077
AT5G59080			unknown protein		Potri.009G038300 [exp]	12.36	0.7747
AT5G54660			HSP20-like chaperones superfam...		Potri.011G131800 [exp]	14.42	0.7952

Compare expression of checked genes

Potri.010G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.