Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67720 1330 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 870 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G49100 459 / 1e-147 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 455 / 5e-146 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 454 / 1e-145 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G46420 442 / 1e-141 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 439 / 6e-140 Leucine-rich repeat protein kinase family protein (.1.2) AT1G51890 436 / 7e-139 Leucine-rich repeat protein kinase family protein (.1.2) AT2G14510 435 / 2e-138 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 432 / 9e-138 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181200 [exp] 1678 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 881 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 865 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 437 / 1e-138 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 437 / 2e-138 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094700 [exp] 397 / 2e-123 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 394 / 2e-122 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 385 / 2e-119 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 301 / 6e-92 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037051 [exp] 1523 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 1517 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 884 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 881 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 875 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 462 / 3e-148 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 419 / 2e-131 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 399 / 3e-124 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 372 / 6e-115 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 330 / 1e-101 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G052800.1 pacid=42799458 polypeptide=Potri.010G052800.1.p locus=Potri.010G052800 ID=Potri.010G052800.1.v4.1 annot-version=v4.1 ATGGCTTCGCATTCCCATTTTCTGCTTCTCTATTTATTCCTCATGTCTTCTGTTATATGCCAAGTTACAGAATTCATCAGCATAGATTGTGGAGGCACAA GTAATTACACAGATCCAATAACTGGACTTGCATGGGTTTCAGACAATGGCGCCATCATGAACTATGGAAAATCGGCAGAGGTAGAAATTCCAAATGGAAA TATGCAGTATCGAAGACGGCGAGACTTTCCTATAGACAGCAAGAAGTATTGTTACACTCTTGGCACCAAAGAGAGACGTCGGTATCTTGTCCGTGCCACA TTTCAGTATGGAATCTTAGGAAATGGAGATGCATACCCCAAATTTGATCTCTACTTGGATGCAACGAAGTGGTCGACTGTGGTAGTATTGGATGCTTCAA GAGTGTATGTGAAGGAAATGATTATCAGGGCTCCTTCAAGTTCAATTGATGTGTGTATATGCTGTGCTTCAACTGGTTCTCCCTTCATATCCACTCTAGA ATTGCGACCTCTCAACCTTTCAATGTATGCAACTGATTTCGAGGATAATTTCTTCTTAGAGGTAGCAGCCAGAGTAAATTTTGGGGCTCTGAGCAAGGAT GTCATAAGGTACCCGGATGATCCGTATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAACTACCTTGTAGGTGTGGCCCCTGGCACAGTTAGAA TCAATACATCAAAGTACATAGACACTAGGACTAGAGAATACCCTCCTGTTAAAGTAATGCAAACAGCTGTTGTTGGCACTCAAGGGATACTTAGTTATAG GTTGAACCTTGATGACTTCCCTGCCAATGCTCGAGCTTATGCATATTTTGCCGAAATTGAAGACTTGGGAGCAAATGAGACTCGGAAATTCAAATTGCAG CAACCTTACTTTCCTGACTACAGCAACGCAGTGGTAAATATTGCAGAAAATGCCAATGGGAGCCACACACTTTATGAACCCAGCTACATGAATGTGACTC TGGATTTTGTCCTTTCATTCTCTTTTGTCAAGACCAGAGATTCTACACAAGGACCACTCTTAAATGCGATTGAGATTAGTAAATACCTAAAGATTGAACC AAGGACCGACAGCCAAGATGTGACTGTTCTCAATGCCCTTCGTTCTCTGTCTGCTGAAAGTGCTTGGACAAATGAACAAGGCGATCCTTGTGTTCCTGCT CACTGGGATTGGGTTAATTGCACCTCAACCACACCACCAAGAATCACTAAAATTGCACTGTCAGGAAAGAACCTGAAAGGGGAGATTCCACCTGAGATTA ATAACATGGAGACATTGACAGAATTGTGGTTGGATGGTAACTTCCTTACAGGGCCAATCCCTAGTATAAGCAATCTTGTTAATTTGAAAATAGTGCATCT GGAGAACAACAAACTGAGTGGTCAATTACCCAAGTACCTGGGTAGTTTGCCAGACTTACAAGAGCTGTACATACAGAACAACTACTTTAGTGGGGAAATA CCTTCAGGGTTGCTAACTGGAAAAGTTATTATCAATTATGAACATAATCCTGGACTACATAAAGAGGCAGGGAAAAAGAAACATTCTAAGTTGATACTTG GAGTTTCGATTGGCATACTTGCAGCACTATTAGTTGTTCTGATAGGAAGTTTACTGTTTTTGCGTAATCTTCAAAGAAAGACATCTCATCAAAAAACTGC AGTCCAAGGTAGTTCTTTGCGTGTTAGTGCCAAACCTTCAACTGCGTATTCTGTATCACGGGGTTGGCATATGATGGATGAAGGAGTTTCATACTATATT CCGCTCTCTGAGATTGAAGAAGCTACCAAAAACTTTTCCAAAAAAATTGGTAGAGGAAGTTTTGGGACTGTCTACTATGGCCAAATGAAAGAGGGAAAAG AAGTGGCAGTCAAGATAATGGGTGACTCAACCACTCATATGACCCAGCAGTTTGTGACTGAGGTTGCCCTCTTGTCAAGAATTCATCACAGGAACTTGGT TCCTTTGATCGGCTATTGTGAAGAAGAAAATCAACGTATTCTGGTTTATGAATATATGCACAATGGAACTTTGCGCGATCACATACATGGTTCTGTCAAC CAGAAGCGCTTAGATTGGCTTGCTCGTCTGCAGATTGCAGAAGATTCAGCAAAAGGACTTGAATACTTGCACACTGGATGCAACCCCAGTATCATACACC GCGATGTTAAAACAAGCAACATTCTCCTAGACATCAATATGAGAGCAAAAGTTTCAGATTTTGGGCTTTCAAGGCAAGCAGAGGAGGATTTAACCCATGT ATCAAGTGTGGCACGAGGAACAGTCGGCTACCTGGATCCTGAGTACTATGCAAATCAGCAATTGACTGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTT CTCCTTGAGCTGTTATCAGGGAAAAAACCTGTTTCGACAGAAGATTTTGGCGCTGAGATGAACATTGTTCATTGGGCAAGGGCCTTGATTCGTAAAGGAG ATGCGATGAGCATTGTAGATCCTGTCCTAATAGGAAATGTGAAGATCGAGTCCATTTGGAGGATTGCTGAAGTTGCAATCCAGTGTGTAGAACAACGTGC AGTTTCGCGACCAAGGATGCAAGAAATAATCTTGGCAATACAAGAAGCTAACAAGATTGAAAAGGGAACTTATGGCAGTCAAAAACTACCTTCTGGTAGT TCAAAGGCACAATCTTCCCGGAAAACATTACTTACAAGCTTTCTTGAGATTGAGAGCCAGAGCCCTGACTTATCTAATGGTTGCCTTGTCCCAGCAGCCA GATAA
AA sequence Show only first row Show all	>Potri.010G052800.1 pacid=42799458 polypeptide=Potri.010G052800.1.p locus=Potri.010G052800 ID=Potri.010G052800.1.v4.1 annot-version=v4.1 MASHSHFLLLYLFLMSSVICQVTEFISIDCGGTSNYTDPITGLAWVSDNGAIMNYGKSAEVEIPNGNMQYRRRRDFPIDSKKYCYTLGTKERRRYLVRAT FQYGILGNGDAYPKFDLYLDATKWSTVVVLDASRVYVKEMIIRAPSSSIDVCICCASTGSPFISTLELRPLNLSMYATDFEDNFFLEVAARVNFGALSKD VIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTVRINTSKYIDTRTREYPPVKVMQTAVVGTQGILSYRLNLDDFPANARAYAYFAEIEDLGANETRKFKLQ QPYFPDYSNAVVNIAENANGSHTLYEPSYMNVTLDFVLSFSFVKTRDSTQGPLLNAIEISKYLKIEPRTDSQDVTVLNALRSLSAESAWTNEQGDPCVPA HWDWVNCTSTTPPRITKIALSGKNLKGEIPPEINNMETLTELWLDGNFLTGPIPSISNLVNLKIVHLENNKLSGQLPKYLGSLPDLQELYIQNNYFSGEI PSGLLTGKVIINYEHNPGLHKEAGKKKHSKLILGVSIGILAALLVVLIGSLLFLRNLQRKTSHQKTAVQGSSLRVSAKPSTAYSVSRGWHMMDEGVSYYI PLSEIEEATKNFSKKIGRGSFGTVYYGQMKEGKEVAVKIMGDSTTHMTQQFVTEVALLSRIHHRNLVPLIGYCEEENQRILVYEYMHNGTLRDHIHGSVN QKRLDWLARLQIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVV LLELLSGKKPVSTEDFGAEMNIVHWARALIRKGDAMSIVDPVLIGNVKIESIWRIAEVAIQCVEQRAVSRPRMQEIILAIQEANKIEKGTYGSQKLPSGS SKAQSSRKTLLTSFLEIESQSPDLSNGCLVPAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	1.41	0.9528	ATGSL11.2
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.005G203500 [exp]	2.00	0.9339	ATGSL11.1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	2.44	0.9325
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.014G102700 [exp]	3.00	0.9095	Pt-CYP78.2
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	6.24	0.9017
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	8.94	0.9194
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	9.74	0.8932
AT1G71870			MATE efflux family protein (.1...		Potri.019G086100 [exp]	9.79	0.9172
AT2G47750		GH3.9	putative indole-3-acetic acid-...		Potri.002G206400 [exp]	10.95	0.8982	GH3-9
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	12.44	0.9188

Compare expression of checked genes

Potri.010G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.