Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27670 141 / 1e-41 HSP21 heat shock protein 21 (.1) AT4G25200 86 / 2e-20 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 83 / 3e-19 HSP20-like chaperones superfamily protein (.1) AT1G52560 83 / 5e-19 HSP20-like chaperones superfamily protein (.1.2) AT1G07400 64 / 2e-12 HSP20-like chaperones superfamily protein (.1) AT5G37670 55 / 2e-09 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT1G59860 52 / 3e-08 HSP20-like chaperones superfamily protein (.1) AT1G53540 52 / 3e-08 HSP20-like chaperones superfamily protein (.1) AT4G10250 52 / 7e-08 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G12030 50 / 8e-08 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022400 [exp] 115 / 4e-31 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.003G076000 [exp] 82 / 6e-19 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G109200 [exp] 76 / 1e-16 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.001G192600 [exp] 76 / 4e-16 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.015G005801 [exp] 71 / 5e-15 AT4G27670 0 / 1 heat shock protein 21 (.1) Potri.009G039200 [exp] 58 / 2e-10 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 57 / 3e-10 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 55 / 2e-09 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 54 / 7e-09 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006444 [exp] 206 / 5e-67 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10011385 [exp] 203 / 6e-66 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10022322 [exp] 150 / 3e-45 AT4G27670 85 / 3e-20 heat shock protein 21 (.1) Lus10014876 [exp] 86 / 4e-21 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10023653 [exp] 81 / 8e-18 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10024225 [exp] 74 / 1e-15 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10031154 [exp] 73 / 2e-15 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10031730 [exp] 69 / 3e-13 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10026262 [exp] 52 / 3e-08 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 52 / 7e-08 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.010G053400.3 pacid=42799480 polypeptide=Potri.010G053400.3.p locus=Potri.010G053400 ID=Potri.010G053400.3.v4.1 annot-version=v4.1 ATGATCAAAATGTCTCACGCACTGTCAAATTTAAGCCTCTCTCTTCCTCTGCCATCAATGAAGGGTGCTTCTTCAAGAAACCTTCATGGCATAGCATTTA GCTACAACCACAACCACAAGAGCAACAACAACATGAAGGCCATGGCAGCAGAGAGCAGAGAGAATCTTGACCACTTGCAGAGAGCCAGGAAGAACCCTCA ACAATCTCAACACAAGAAAAGAGTGGCCCCTGCTGCACCAATAGGGTTATGGGACAGGTTTCCTACTGCAAGAACAGTGCAGCAGATGATGGAGACAATG GAGAGGGTGATGGAGGACCCATTTGTCTACTCAGGTAGGTGGCCATCACCATTACCTGTAGAGGGGAGTGGGTACAGCAGAGGAAGGACACCATGGGAGA TAAAAGAGGGTGAAGATGAGTACAAGATGAGGTTTGATATGCCAGGAATGACTAAAGAAGATGTGAAAGTTTGGGTTGAGGAGAAGATGCTCGTTGTTAA GGCTGAGAAGGTGCCCCAGAAGACGGTGAATGGCGTAGAGAATGGAGAAGAAGAGGAGGGAGAGTGGTCTGCAAAGAGTTATGGCAGGTATAGCAGTAGA ATTGCTCTGCCAGAGAATATTCAATTTGAGAAGATCACTGCTGAAGTTAAAGATGGGGTTTTGTATATAACTATACCTAAAGCTAGTGCCACTGCCAAGA TTCATGATATCAATGTTCAGTGA
AA sequence Show only first row Show all	>Potri.010G053400.3 pacid=42799480 polypeptide=Potri.010G053400.3.p locus=Potri.010G053400 ID=Potri.010G053400.3.v4.1 annot-version=v4.1 MIKMSHALSNLSLSLPLPSMKGASSRNLHGIAFSYNHNHKSNNNMKAMAAESRENLDHLQRARKNPQQSQHKKRVAPAAPIGLWDRFPTARTVQQMMETM ERVMEDPFVYSGRWPSPLPVEGSGYSRGRTPWEIKEGEDEYKMRFDMPGMTKEDVKVWVEEKMLVVKAEKVPQKTVNGVENGEEEEGEWSAKSYGRYSSR IALPENIQFEKITAEVKDGVLYITIPKASATAKIHDINVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	1.00	0.9690
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.012G022400 [exp]	1.41	0.9492	Pt-HSP21.3
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	2.00	0.9416
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	2.23	0.9349
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G109200 [exp]	9.94	0.9464	HSP23.1
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	15.62	0.8141
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.017G146600 [exp]	16.30	0.9283
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	17.74	0.8810
AT3G05500			Rubber elongation factor prote...		Potri.005G025700 [exp]	17.83	0.8299	Pt-SRPP.3
AT1G16740			Ribosomal protein L20 (.1)		Potri.004G095475 [exp]	18.24	0.9249

Compare expression of checked genes

Potri.010G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.