Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 424 / 9e-147 HXXXD-type acyl-transferase family protein (.1) AT3G26040 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) AT4G15390 259 / 7e-82 HXXXD-type acyl-transferase family protein (.1) AT1G24420 244 / 3e-76 HXXXD-type acyl-transferase family protein (.1) AT3G30280 241 / 3e-75 HXXXD-type acyl-transferase family protein (.1) AT5G47950 240 / 8e-75 HXXXD-type acyl-transferase family protein (.1) AT5G23970 229 / 1e-70 HXXXD-type acyl-transferase family protein (.1) AT5G47980 197 / 2e-58 HXXXD-type acyl-transferase family protein (.1) AT4G15400 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT5G41040 139 / 1e-36 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054002 [exp] 867 / 0 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 312 / 1e-102 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 305 / 9e-100 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 303 / 4e-99 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 302 / 9e-99 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 301 / 2e-98 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 301 / 9e-98 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 291 / 2e-94 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 287 / 5e-93 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013231 [exp] 292 / 8e-95 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 289 / 1e-93 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 258 / 3e-81 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 256 / 1e-78 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 248 / 1e-77 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 237 / 2e-73 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 236 / 5e-73 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 234 / 5e-72 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 226 / 3e-69 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 223 / 3e-68 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G053800.1 pacid=42799704 polypeptide=Potri.010G053800.1.p locus=Potri.010G053800 ID=Potri.010G053800.1.v4.1 annot-version=v4.1 ATGAAGATTGAAATTGAAGTAATCTCCAACGAGATCATCAAGCCATCTTCTCCAACCCCAGATCACCTTCGCCATTACCAGCTCTCCTTTCTTGATCAAA TCTCTCCCCCAACCTATAACCCTTTGCTCCTCTTCTATCCAGCAGACGGTGATGTCAAGATCAACAACATAGAGAAACCTAACCAGCTCAAGCAATCCTT GTCTGAGGTCTTAAACCTTTACTATCCCTTAGCCGGACGTATTAAGGACAACCTTTTCGTAGAGTGCAACGATGAGGGCATTCCATTTTTCCAGGCAGAA GTCAAGTGCCGACTTCCACAAGTTGTTGAGAATCCAGAACCTAGTGAACTCAACAAGTTGATCCCATTTGCACTAGATGATGCTGAAGAACTGCCTCTAG GCATCCAGTACAACATCTTTGAGTGTGGTGGAATTGTTATTGGTCTGTGCATCTCACACAAAGTTGGAGATGCATCATCACTGTTCACGTTTATCAAATA TTGGGCTGCCACTGCTCGTGGAGAAGCAGATCACATATCAAGACCAGAGTTTATCTCTGCAACTCTCTTCCCACCTATCAACATATCAGGGTTTAAACCA GCCACTGGTATCACTAAAGAAGATGTTGTGACAAAAAGGTTCGTGTTCCGCTCCTCTTCAATAGAGCTGCTAAAAGAAAAATGCAGTCCTGCAAGTGGAA GCTTGGAAAATCAGCGACCACCATCACGTGTTGAGGCCTTGTCAGTATTCATATGGCAACGCTTCACAGCTGCCACTAAAGTAGAATCAAGACCTGAAAG AATTTACTCCATGGTTCATGCAGTGAACCTGCGCTCGAGGACGGAACCTCCGCTCCCAGAATACTCCTTCGGAAACTACTATCGGATTGCATTCACAATT CCATCCATTGATACTGGCGAGGAAAACTACAATCTTGTTAGTCAGATCAGAGACTCAATTGGTAAAGTTGACAAAGAATACGTGAAGAAACTTCAAAAGG GCAGTGAGCACTTGGGCTTCATGAAAGAACAAGCTGCAAGATTTCTCAGAGGTGAGGTGGTTTCTTTGAACTTCACAAGCTTGTGCAGGTTTCCTTTGTA TGAAGCTGATTTTGGGTGGGCGAAACCTATATGGGTAGGCTCTCCAAGTCTCACCTTCAAGAACCTAGTTGTTTTCATGGACACTGCATCAGGTGATGGA ATAGAAGCACTTGTGCACTTGAAGGAGGAAGACATGGCCAAATTCCAAGAGGATGAGGAGTTGCTTCAGTATATTGTACCAACCAAATGTTAA
AA sequence Show only first row Show all	>Potri.010G053800.1 pacid=42799704 polypeptide=Potri.010G053800.1.p locus=Potri.010G053800 ID=Potri.010G053800.1.v4.1 annot-version=v4.1 MKIEIEVISNEIIKPSSPTPDHLRHYQLSFLDQISPPTYNPLLLFYPADGDVKINNIEKPNQLKQSLSEVLNLYYPLAGRIKDNLFVECNDEGIPFFQAE VKCRLPQVVENPEPSELNKLIPFALDDAEELPLGIQYNIFECGGIVIGLCISHKVGDASSLFTFIKYWAATARGEADHISRPEFISATLFPPINISGFKP ATGITKEDVVTKRFVFRSSSIELLKEKCSPASGSLENQRPPSRVEALSVFIWQRFTAATKVESRPERIYSMVHAVNLRSRTEPPLPEYSFGNYYRIAFTI PSIDTGEENYNLVSQIRDSIGKVDKEYVKKLQKGSEHLGFMKEQAARFLRGEVVSLNFTSLCRFPLYEADFGWAKPIWVGSPSLTFKNLVVFMDTASGDG IEALVHLKEEDMAKFQEDEELLQYIVPTKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037700 [exp]	1.00	0.9844
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	2.82	0.9666
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	3.46	0.9679
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.002G086700 [exp]	4.47	0.9568
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	4.58	0.9587
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270400 [exp]	5.47	0.9629
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037800 [exp]	6.24	0.9519
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.008G081600 [exp]	6.32	0.9582
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	7.74	0.9546
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.002G057200 [exp]	8.66	0.9496

Compare expression of checked genes

Potri.010G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.