Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) AT1G24420 320 / 2e-105 HXXXD-type acyl-transferase family protein (.1) AT4G15390 286 / 3e-92 HXXXD-type acyl-transferase family protein (.1) AT5G47950 283 / 2e-91 HXXXD-type acyl-transferase family protein (.1) AT3G30280 280 / 5e-90 HXXXD-type acyl-transferase family protein (.1) AT5G47980 278 / 3e-89 HXXXD-type acyl-transferase family protein (.1) AT1G24430 259 / 9e-82 HXXXD-type acyl-transferase family protein (.1) AT5G23970 256 / 9e-81 HXXXD-type acyl-transferase family protein (.1) AT4G15400 243 / 1e-75 HXXXD-type acyl-transferase family protein (.1) AT2G19070 110 / 2e-26 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180400 [exp] 741 / 0 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 411 / 3e-141 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 410 / 8e-141 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 410 / 1e-140 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 333 / 2e-110 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 308 / 6e-101 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 299 / 2e-97 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 296 / 2e-96 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 290 / 9e-94 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036929 [exp] 439 / 4e-149 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 308 / 2e-100 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 307 / 2e-100 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 261 / 1e-82 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 259 / 1e-81 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 255 / 3e-80 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 245 / 3e-76 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 222 / 2e-67 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 217 / 1e-65 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 217 / 2e-65 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G054100.1 pacid=42797147 polypeptide=Potri.010G054100.1.p locus=Potri.010G054100 ID=Potri.010G054100.1.v4.1 annot-version=v4.1 ATGGCTATAGATCAGGTAAATGTTGAGATCGTTGCTAGAGAAGTCATAGGACCATCCTCTCCAACCTTAAATCACTTGAGAAAGTTTAACCTTAGCCTTC TGGATCAGCTTGCTCCTGTGTCATATGAACCTTTGGTTCTCTTGTACTCCAATTTCCAGCAGCAACGCACAGGTTATCACGAATCTCTGCGGCTAAAGAG ATCGCTGTCTGAAACCTTAACCCGATTCTACCCACTTGCCGGCAGGATCAAAGATGGTGCCTCGATTGAATGCAACGATCTTGGAGCTGTTTTTGTTGAA TCACGAGTCAGCTGTCTTCTCTCCAAGTTTCTTGAAAAGCCTGATGCTGAGGCGATAAGAAAATTCATTCCTGTTGAGACTGAATCACCAGAAGCACTCA CGGGTAGTCTAGTGCTTGTTCAAGCAAATTTCTTTGCCTGCGGTGGGTTGGCGATTGGAGTTTGCATTTCTCACAAGGCAGCTGATCCGGTTACCTTCAG CACTTTCATCAAGGCTTGGGCAGCTGCGGCTTTTCGGTCTGTCAACGACAGTACCGTGCTTCCATTATTCAACGCATCATCCCTATTCCCACCGCAGAAC TTACCGCTTACAAGGCCTGCAGCTGTCGAATTGATGAATGATAAATGCGTTACAAAGAGACTTGTCTTTGATGCCTCCAAGATTGCTGCTCTCCAGGCTA AGGCTGTGAGTGAAAGCGTGACATGTCCGACAAGAGTTGAAGCTGTGACAGCCCTGATTTGGAAATGTGCAATGAACGCATCAAGATCGAATTCGGAGCA TTTAAGATATTCTATTCTCTCACAATCCGTGAATTTACGCAAGAGAATGGTGCCTCCCTTGCCTGAAAACACTATTGGAAACCTCGTGGGTTACTTTGCT TCATGTGCTACGGAGTGTGAGATAGAATTGCAAAGCTTGGTTGGTCAGCTAAGGAAAGGGTTGCGGGATTTTGGTGAGAACTATGTGGAGAAACTTGGAG AAGGTAAGGCTTTCATGGCTGTTTGTGAATCTTTCCAAGAGGCAGGAAGCATGCTCCAAGAAGGCAATGTAGACTTTTATGCAAGCACCGATTTCTGCAG GTTTCCATTTTACGGGATTGATTTCGGGTGGGGAAAGCCCACCTGGGTGACCATTCCCACCGGAGCTAACAAGAACGTGACTACAATTATGGACACAAGA GACGGCGAGGGAGTGGAGGCTTGGGTGACTTTAACCGAAGAAGACATGGCCTTTTTTGAACGCGATCGCGAGCTGCTTGCAGCTGCTTCTCTGGATCCAA GTGCCTTAGACCTCATCATGCCCATGTCTTCTCTTTAA
AA sequence Show only first row Show all	>Potri.010G054100.1 pacid=42797147 polypeptide=Potri.010G054100.1.p locus=Potri.010G054100 ID=Potri.010G054100.1.v4.1 annot-version=v4.1 MAIDQVNVEIVAREVIGPSSPTLNHLRKFNLSLLDQLAPVSYEPLVLLYSNFQQQRTGYHESLRLKRSLSETLTRFYPLAGRIKDGASIECNDLGAVFVE SRVSCLLSKFLEKPDAEAIRKFIPVETESPEALTGSLVLVQANFFACGGLAIGVCISHKAADPVTFSTFIKAWAAAAFRSVNDSTVLPLFNASSLFPPQN LPLTRPAAVELMNDKCVTKRLVFDASKIAALQAKAVSESVTCPTRVEAVTALIWKCAMNASRSNSEHLRYSILSQSVNLRKRMVPPLPENTIGNLVGYFA SCATECEIELQSLVGQLRKGLRDFGENYVEKLGEGKAFMAVCESFQEAGSMLQEGNVDFYASTDFCRFPFYGIDFGWGKPTWVTIPTGANKNVTTIMDTR DGEGVEAWVTLTEEDMAFFERDRELLAAASLDPSALDLIMPMSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	0	1
AT2G35380			Peroxidase superfamily protein...		Potri.001G145800 [exp]	2.00	0.8219
AT5G02090			unknown protein		Potri.006G090100 [exp]	2.00	0.8003
					Potri.008G125400 [exp]	4.00	0.7062
					Potri.019G129600 [exp]	7.41	0.7019
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167532 [exp]	9.48	0.7056
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	10.67	0.7382
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	11.83	0.7055
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019500 [exp]	12.24	0.7122
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040450 [exp]	12.24	0.6697
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	13.41	0.6752

Compare expression of checked genes

Potri.010G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.