Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67690 850 / 0 Zincin-like metalloproteases family protein (.1) AT5G51540 186 / 5e-50 Zincin-like metalloproteases family protein (.1) AT5G65620 184 / 4e-49 Zincin-like metalloproteases family protein (.1) AT5G10540 168 / 7e-44 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129300 [exp] 194 / 2e-52 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 165 / 2e-42 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 152 / 2e-38 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037058 [exp] 972 / 0 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 946 / 0 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 176 / 2e-46 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 165 / 3e-42 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 122 / 1e-28 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 122 / 2e-28 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01432 [poplar] [flax] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Potri.010G054466.2 pacid=42796831 polypeptide=Potri.010G054466.2.p locus=Potri.010G054466 ID=Potri.010G054466.2.v4.1 annot-version=v4.1 ATGGAAATGACAGAAAATCAGAGCGACAAAACGAGTAAACACAAGAGAGAACGAAACCTACTGGCCTTCACTGGAGCTGCTGCTCTCGCTGCTCTTGCTC TTAGCCTGGCTATCTCCGCCCTCAATTCCCGCCGCAAAAAGTCCAACAAGAAAGATCTTTCGGGGTCCAATGCTCGCATTAATCTCTCGGCATCTGAGAT TCTCAAACTAGCTGACCGAATCATTGCTAAGTCGAAAGAGGTTCACGACGCCGTTGCTTCAGTTCCTCTTGACAAGGTTACATATGCGAATGTAATGTCG CCCCTAGCTGATTTGGAGGCACATCAATTTCCTCTGGTCCAGTCTTGCGTGTTTCCAAAGTTGGTTTCCACTTTAGAAGATGTGCGGAAAGCGAGTGCGG AAGCAGAACGCAGAATCGATGCTCACGTTTCGATGTGCAGTAAACGTGAAGATGTATACCGCGTGGTAAAGGCCTTTGCCTCAAAGGGGGAGTGGATGAA TCCTGAAGCTAAACACTACATTAAGTGCCTGGTCAGAGACTTTGAGCAGAATGGTTTGAATCTCACTGTTACCAAGAAAGAGGAAGTACAGCGTTTGAGA GCTCAAATTGAAGAGCTAAGCTTGCGATATGTTCGCAATTTGAATGATGATAGCAGTTGTCTTCTTTTCAGTGAGGCAGAGCTGGTTGGATTACCACCAG AGTACCTTAAGAGCTTAGACAAGGCTGGAAATGACAAATATAAGATCACATTGAGAAGTCATAATGTTTTAGCACTGCTGGAGTTTTGCCAGGTAGGAAC AACGAGGAGGATGGTTGCTGCAGCATATGGGAAGAGGTGTGGAGAAGTCAATCTTTCTGTGTTGGAAAGTTTGGTTGAGTTGCGCCATAAATATGCTCGG TTATTTGGCTTTTCAAACTATGCTGACTATGCTGTTGATCTAAGAATGGCAAAGACATCCACAAAGGTATTTGAGTTCTTAGAGGATATCTCTGCCAGTT TAACTGACTTGGCAACGAGGGAGCTTGCCTTGTTGAAAGACTTGAAGAAGAAAGAAGAAGGAGAGCTTCCATTTGGAATGGAAGATCTACTGTACTATGT GAAGAGGGTTGAAGAAGCACAGTTCGATCTGGACTTTGGAGCTCTTAAGCAATACTTTCCTGTGGATGTTGTTCTGTCTGGAATCCTCAAAATAACCCAA GACCTTTTTGGATTAAGATTTCAGGAAGTTGCAGATGCTGAGGTTTGGCATGGTGATGTTAGTGTCTTTTCTGTTTTTGACTTAAGTTCAGGTGAACTTC TGGGTTATTTCTACCTTGATATATACATGAGGGAAGGAAAATATGGTCATACATGTGTAGTTGCTCTTCAAAATGGTGCATTATCATACAGTGGTGAACG ACAGATACCAGTGGCATTACTTATCTCCCAATTACAAAAAGGCAATGGCGGGCACTCTGGTTTATTAAGATTCCCTGAAGTGGTTAGTCTTTTCCATGAG TTTGGCCACGTGGTCCAACATATTTGCAATCGTGCATCCTTCGCCAGATTCTCTGGGTTGCGAGTTGATCCTGATTTTGTGGAGATCCCCGCGTTGGTGC TAGAAAACTGGTGCTACGAGAGCTTCTCGCTGAAGTTGATTTCTGGTTTCCATCAGGATATCACAAAGCCCATCAATGATGAAATATGCAAATCACTTAA AAGATGGCGAAATTCCTTCTCTGTGCTTAAATTGAAGCAGGAAATTCTTTATTGTCTTTTTGATCAAATTATACATTCAACTGACAATGTTGACATTGTC GAGTTATTCAAGCATCTTCATCCTAAGGTCATGTTAGGCCTGCCAATGTTGGAAGGAACCAATCCAGCTTCATGTTTCCCGCGCAGTGCTATTGGTTTTG AAGCTGCTTGCTACAGCCGTATTTGGAGCGAGGTGTTCGCAACTGACGTATTTGCTTCAAAGTTTTGTGATGATCTCGTAAACCACCATGTTGGCATGCA GTTTAGGAACAAGGTATTGGCCATGGGAGGAGCAAAGGAGCCCATTGAGATTTTGTCAGATTTTCTTGGAAGAGAACCATCTATTGATGCTTTTATTGAC AGCAAGACCAAATATAGCCCATGA
AA sequence Show only first row Show all	>Potri.010G054466.2 pacid=42796831 polypeptide=Potri.010G054466.2.p locus=Potri.010G054466 ID=Potri.010G054466.2.v4.1 annot-version=v4.1 MEMTENQSDKTSKHKRERNLLAFTGAAALAALALSLAISALNSRRKKSNKKDLSGSNARINLSASEILKLADRIIAKSKEVHDAVASVPLDKVTYANVMS PLADLEAHQFPLVQSCVFPKLVSTLEDVRKASAEAERRIDAHVSMCSKREDVYRVVKAFASKGEWMNPEAKHYIKCLVRDFEQNGLNLTVTKKEEVQRLR AQIEELSLRYVRNLNDDSSCLLFSEAELVGLPPEYLKSLDKAGNDKYKITLRSHNVLALLEFCQVGTTRRMVAAAYGKRCGEVNLSVLESLVELRHKYAR LFGFSNYADYAVDLRMAKTSTKVFEFLEDISASLTDLATRELALLKDLKKKEEGELPFGMEDLLYYVKRVEEAQFDLDFGALKQYFPVDVVLSGILKITQ DLFGLRFQEVADAEVWHGDVSVFSVFDLSSGELLGYFYLDIYMREGKYGHTCVVALQNGALSYSGERQIPVALLISQLQKGNGGHSGLLRFPEVVSLFHE FGHVVQHICNRASFARFSGLRVDPDFVEIPALVLENWCYESFSLKLISGFHQDITKPINDEICKSLKRWRNSFSVLKLKQEILYCLFDQIIHSTDNVDIV ELFKHLHPKVMLGLPMLEGTNPASCFPRSAIGFEAACYSRIWSEVFATDVFASKFCDDLVNHHVGMQFRNKVLAMGGAKEPIEILSDFLGREPSIDAFID SKTKYSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	0	1
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	2.00	0.8311
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	3.87	0.7986
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	5.29	0.7740
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	6.00	0.8105	Pt-PHB.1
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	6.08	0.7485
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	8.48	0.8141
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	14.96	0.7915
AT2G34920		EDA18	embryo sac development arrest ...		Potri.003G156400 [exp]	15.81	0.7580
AT1G27460		NPGR1	no pollen germination related ...		Potri.002G118500 [exp]	18.73	0.7032	NPGR1.1
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	22.04	0.7351

Compare expression of checked genes

Potri.010G054466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.