Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26000 395 / 8e-135 Ribonuclease inhibitor (.1) AT3G27290 207 / 1e-62 RNI-like superfamily protein (.1) AT2G01620 141 / 1e-38 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179800 [exp] 685 / 0 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1) Potri.001G337300 [exp] 348 / 9e-117 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1) Potri.010G108600 [exp] 211 / 1e-64 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.008G133100 [exp] 68 / 8e-14 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037060 [exp] 474 / 2e-165 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1) Lus10006438 [exp] 296 / 2e-95 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1) Lus10007930 [exp] 152 / 3e-42 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10013466 [exp] 139 / 1e-37 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10011378 [exp] 92 / 8e-22 AT3G26000 78 / 3e-17 Ribonuclease inhibitor (.1) Lus10002014 [exp] 46 / 5e-05 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 44 / 0.0003 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10027450 [exp] 42 / 0.001 AT3G48880 434 / 2e-154 RNI-like superfamily protein (.1.2) Lus10005745 [exp] 42 / 0.001 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G054600.1 pacid=42797156 polypeptide=Potri.010G054600.1.p locus=Potri.010G054600 ID=Potri.010G054600.1.v4.1 annot-version=v4.1 ATGGCGTTGAATTTTTCGCATAGACCCCTCTTTCCTCGTCTATCTGAGGATAATTTGGTTTCACCGATGAGGATTTCGATACAGGAGAAAGTGGAGGATT GTTTTGATTATGGAAGGGATAGGAGTGGCTCACAGGAGTCTGTGCATAAGGATATTCTTGATCTTTTGCCTTCCGATCCCTTTGGCATGGATATAAGTAC GACATTTACTGCTGTTACGGGGTGGCTTGAGGATCTGGAGGTGGATTATGGTGGTTATGGTAGGGATCGGGTTTCCACGAGAGATGGAAATTACCAGTTG TTTGCTGACTTGAATTTTATTTGCAATAATGCCATGTGGTTTCAACAATTTCCTGGGAACATGGGGTTCGATTTATCTAACGTAGTGGGTGGGTATGGTG ATGAGCGTTCGGAGGCGAATGAAGTTGGGAATGCACCTCATCAAGAGGCTCCTGGATCAGATTGTGACATGGAGGATGTTTTGAGTCCGGGGAATGAAAT CATAGACAATGAAACTGTTGGGGTTGTGGATGAGAGCAGTGGAGAATTCCAAAATGGTCATTTGGTTTGCTCTGAGGGAGATAAAGAAGCTCCTCATGCA GCTTTTGCTTTTGCTCTTGGTTATCTGGGTGTGCGGGATCTTCTTGTTGTTGAAACTGTTTGCCGATCCCTGCGTTCCACTGTTCAAAGTGACCCGCTTT TATGGAGGAGTATCCACATAGATCAACCATTGAATGAGAAGATCACTGATGATGTTCTTTTGCAGTTAACTAATAGGGCTCAAGGCAACTTGCAATGTTT GAGCCTAGTGGAGTGTCCAAGGATTACTGATGACGGGTTGAAGCATGTGCTCGAAAATAATCCAAGGCTGACCAAGTTGAGTGTACCTGCATGTACAAGA CTCAGCATCGAGGGCATTGTAACTAGCTTAAAGGCATTCAAAGCTACGGGGACTCATGGGGTGAAGCACTTGCGCATTGGTGGGCTCTATGGTGTGACAC AGAAGCATTTTGAAGAGTTAATGTTCTTGTTGGGCCCAGATAGCCACATCCAACAGAATGCTCACAAGCCACATTTTTATCACAGAGGAAATCTTTATCT GTCATGTGAGGATGATCGTGCAATTGATATTGAAATGTGCCCAAGATGCCAGAACCTGAGGCTAATTTATGATTGCCCTGTAGAGGGTTGCCAGGGAAAA GAGCATCCCTCTCAGGCTTGCAGGGCTTGCAGCCTTTGCATTGCACGATGTGTTCAGTGTGGCCGGTGTATTAATGACAGTGAATATGAGGAAACATTTT GTCTGGAGTTGCTTTGTTCAGATTGTTGGAAACAGCTGCTGAAATGCTAA
AA sequence Show only first row Show all	>Potri.010G054600.1 pacid=42797156 polypeptide=Potri.010G054600.1.p locus=Potri.010G054600 ID=Potri.010G054600.1.v4.1 annot-version=v4.1 MALNFSHRPLFPRLSEDNLVSPMRISIQEKVEDCFDYGRDRSGSQESVHKDILDLLPSDPFGMDISTTFTAVTGWLEDLEVDYGGYGRDRVSTRDGNYQL FADLNFICNNAMWFQQFPGNMGFDLSNVVGGYGDERSEANEVGNAPHQEAPGSDCDMEDVLSPGNEIIDNETVGVVDESSGEFQNGHLVCSEGDKEAPHA AFAFALGYLGVRDLLVVETVCRSLRSTVQSDPLLWRSIHIDQPLNEKITDDVLLQLTNRAQGNLQCLSLVECPRITDDGLKHVLENNPRLTKLSVPACTR LSIEGIVTSLKAFKATGTHGVKHLRIGGLYGVTQKHFEELMFLLGPDSHIQQNAHKPHFYHRGNLYLSCEDDRAIDIEMCPRCQNLRLIYDCPVEGCQGK EHPSQACRACSLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQLLKC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	7.34	0.8348
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	7.81	0.8411
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	9.89	0.8238
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	11.53	0.8004
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	11.74	0.8249
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.001G156000 [exp]	12.24	0.8205
AT3G61800			unknown protein		Potri.014G099300 [exp]	14.69	0.8211
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Potri.001G139400 [exp]	14.76	0.7357	NHL8.1
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	15.81	0.7886
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	15.96	0.8256

Compare expression of checked genes

Potri.010G054600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.