Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48140 132 / 1e-40 B12D protein (.1) AT3G29970 103 / 2e-29 B12D protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179401 [exp] 181 / 7e-60 AT3G48140 137 / 8e-44 B12D protein (.1) Potri.012G074900 [exp] 154 / 3e-49 AT3G48140 137 / 8e-44 B12D protein (.1) Potri.017G098800 [exp] 108 / 2e-31 AT3G29970 131 / 9e-42 B12D protein (.1) Potri.004G117300 [exp] 102 / 3e-29 AT3G29970 126 / 9e-40 B12D protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015825 [exp] 157 / 2e-50 AT3G48140 150 / 3e-49 B12D protein (.1) Lus10036977 [exp] 146 / 9e-46 AT3G48140 132 / 9e-42 B12D protein (.1) Lus10004241 [exp] 141 / 2e-44 AT3G48140 132 / 4e-42 B12D protein (.1) Lus10042151 [exp] 141 / 2e-44 AT3G48140 132 / 4e-42 B12D protein (.1) Lus10035132 [exp] 103 / 3e-29 AT3G29970 112 / 5e-34 B12D protein (.1) Lus10031971 [exp] 45 / 4e-06 AT5G60335 152 / 5e-47 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06522 [poplar] [flax] B12D NADH-ubiquinone reductase complex 1 MLRQ subunit
Representative CDS sequence Show only first row Show all	>Potri.010G055300.2 pacid=42799684 polypeptide=Potri.010G055300.2.p locus=Potri.010G055300 ID=Potri.010G055300.2.v4.1 annot-version=v4.1 ATGGTTGGTGGGGTTTTGCTGATCATTCTTGACCTATCCTTTTTCCTTTGGGCACCCACTCTTTTCCTGAATTTTAGGCGTTTCTATCCACTACAAATTC TCTCAATATCAATCACTTCCCTTTCATACTCTCCTTTCCTTCATTTCTCTCTAAACTTGATTTTTCTGGAGAAGGGGATTTCTCTGTTTCTCCTTCTCTC TTGCAATTCTAGCATGGCTCCCTCACGATGGATAAGGCCTGAGGTGTTTCCACTCTTTGCATCTGTTGGTGTAGCTGTTGGCATTTGTGGCATGCAACTT CTTAGGAATATAACCACCAACCCTGAAGTAAGGGTGACGAAAGAGAACAGGGCAGCAGGAGTGCTTGACAACTTTAAAGAGGGCGAGAAATATGCAGAAC ATGGTCTTAGGAAGTATGTCCGAAAGAGAACTCCTCAGATCATGCCATCCATCAACGGTTTCTTCTCAGACCCAGATCTTCCAACTAACTAA
AA sequence Show only first row Show all	>Potri.010G055300.2 pacid=42799684 polypeptide=Potri.010G055300.2.p locus=Potri.010G055300 ID=Potri.010G055300.2.v4.1 annot-version=v4.1 MVGGVLLIILDLSFFLWAPTLFLNFRRFYPLQILSISITSLSYSPFLHFSLNLIFLEKGISLFLLLSCNSSMAPSRWIRPEVFPLFASVGVAVGICGMQL LRNITTNPEVRVTKENRAAGVLDNFKEGEKYAEHGLRKYVRKRTPQIMPSINGFFSDPDLPTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48140			B12D protein (.1)		Potri.010G055300 [exp]	0	1
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	2.00	0.8208
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	3.74	0.8200
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	6.70	0.8151
AT3G11900		ANT1	aromatic and neutral transport...		Potri.016G064500 [exp]	7.87	0.7431	Pt-ANT1.2
AT5G46630			Clathrin adaptor complexes med...		Potri.001G143800 [exp]	11.35	0.7295
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	12.40	0.8006
AT5G16520			unknown protein		Potri.013G087400 [exp]	12.64	0.7922
AT1G48040			Protein phosphatase 2C family ...		Potri.010G151500 [exp]	13.26	0.7005
AT4G18100			Ribosomal protein L32e (.1)		Potri.011G078200 [exp]	13.41	0.8066	RPL32.1
AT2G30620			winged-helix DNA-binding trans...		Potri.008G162300 [exp]	16.97	0.7873

Compare expression of checked genes

Potri.010G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.