Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAPDH.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04120 592 / 0 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 588 / 0 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G16300 491 / 1e-174 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G79530 489 / 7e-174 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G42970 266 / 7e-86 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 244 / 1e-78 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 245 / 2e-78 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179300 [exp] 624 / 0 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.001G335800 [exp] 602 / 0 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 585 / 0 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 578 / 0 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G083900 [exp] 484 / 9e-172 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G172400 [exp] 483 / 2e-171 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.002G007100 [exp] 249 / 7e-80 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 250 / 9e-80 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 243 / 1e-77 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014603 [exp] 582 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 582 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 580 / 0 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 578 / 0 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10006435 [exp] 575 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 575 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 563 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 483 / 2e-171 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 483 / 2e-171 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10016033 [exp] 253 / 1e-80 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00044 [poplar] [flax] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02800 [poplar] [flax] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G055400.1 pacid=42799964 polypeptide=Potri.010G055400.1.p locus=Potri.010G055400 ID=Potri.010G055400.1.v4.1 annot-version=v4.1 ATGGCATGTGATAAGAAGATTAAGATCGGTATCAACGGATTTGGAAGGATCGGTCGTTTGGTTGCTAGAGTTGCTCTTCAAAGAGATGACGTGGAACTTG TTGCTATTAATGATCCTTTTATCACTACTGACTACATGACATATATGTTCAAATATGATACAGTTCACGGTCGCTGGAAGCACAGTGAGCTCAAGGTTAA GGATGAGAAGACCCTTCTCTTTGGTGAGAAGGCTGTCGCTGTTTTTGGCATCAGGAACCCAGAGGAGATCCCATGGGCTCAAGCCGGTGCTGAGTTTGTC GTTGAGTCCACTGGAGTTTTCACAGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCGAAGAAGGTTGTTATCTCCGCCCCAAGCAAAGATGCAC CTATGTTTGTTGTGGGTGTAAATGAGAAGCAATACACTCCAGATCTTGACATTGTTTCCAATGCTAGCTGCACTACAAACTGTCTTGCCCCCTTGGCCAA GGTTATCCATGACAGGTTTGGAATTGTTGAGGGTCTTATGACTACAGTTCACGCGATTACTGCCACTCAGAAAACTGTTGATGGTCCATCAATGAAGGAC TGGAGAGGTGGAAGGGCTGCTTCCTTCAATATCATTCCTAGCAGCACTGGGGCTGCCAAGGCTGTTGGAAAGGTTCTGCCAGCACTTAATGGAAAATTGA CTGGAATGTCCTTCCGTGTTCCTACTGTGGATGTCTCTGTTGTTGACCTCACTGTCAGGCTTGAGAAGAAGGCAACATACGAGGCTATCAAATCTGCTAT CAAGGAGGAGTCTGAGAATAACCTCAAGGGTATTCTGGGTTACGTTGAAGAGGATGTGGTGTCTACTGACTTCATTGGTGACAGCAGGTCAAGCATATTC GATGCCAAGGCTGGAATTGCCTTGAACGATAACTTCGTCAAACTTGTCTCTTGGTATGACAATGAATGGGGCTACAGTTCACGCGTGATTGACTTGATAG CTCACATGGCCAAAACTCAAGCTTGA
AA sequence Show only first row Show all	>Potri.010G055400.1 pacid=42799964 polypeptide=Potri.010G055400.1.p locus=Potri.010G055400 ID=Potri.010G055400.1.v4.1 annot-version=v4.1 MACDKKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDTVHGRWKHSELKVKDEKTLLFGEKAVAVFGIRNPEEIPWAQAGAEFV VESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKQYTPDLDIVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHAITATQKTVDGPSMKD WRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEAIKSAIKEESENNLKGILGYVEEDVVSTDFIGDSRSSIF DAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIAHMAKTQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.010G055400 [exp]	0	1	Pt-GAPDH.3
AT2G25735			unknown protein		Potri.006G244200 [exp]	5.56	0.7499
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108401 [exp]	15.77	0.7193
AT5G01320			Thiamine pyrophosphate depende...		Potri.011G064000 [exp]	18.33	0.6744
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108601 [exp]	20.73	0.7147
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108500 [exp]	23.62	0.7111
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.002G202400 [exp]	24.81	0.6843
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	27.65	0.6705
AT1G03220			Eukaryotic aspartyl protease f...		Potri.019G065100 [exp]	32.71	0.6682
AT4G10265			Wound-responsive family protei...		Potri.001G408300 [exp]	35.14	0.6275
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	36.02	0.6529

Compare expression of checked genes

Potri.010G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.