Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04130 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22670 331 / 2e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 176 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 176 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 173 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 172 / 5e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 168 / 4e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 166 / 7e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30290 168 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G73400 163 / 7e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179201 [exp] 362 / 6e-124 AT3G04130 231 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G084000 [exp] 336 / 2e-109 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 323 / 4e-104 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 303 / 3e-96 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 186 / 2e-51 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 181 / 1e-50 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 171 / 5e-47 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 168 / 2e-45 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 167 / 2e-45 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015827 [exp] 606 / 0 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036975 [exp] 520 / 0 AT3G04130 473 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041193 [exp] 348 / 5e-114 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 185 / 3e-51 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 182 / 2e-50 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 175 / 4e-48 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 174 / 3e-47 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 171 / 9e-47 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042362 [exp] 167 / 1e-45 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 167 / 6e-45 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G055500.1 pacid=42800240 polypeptide=Potri.010G055500.1.p locus=Potri.010G055500 ID=Potri.010G055500.1.v4.1 annot-version=v4.1 ATGAACAGGGTACAAGTACTAAGAAGCTGTCTTAGAAACGCCCGTGTAGTTTTTAGTCGTGCTGATTATTGCTCTCTTGCTGTCTCATCTTCTTCTTCTT CGTGCGTTTCTCCTCCTCAATTACCTTCCGTGCTTACAAGCACGACTGTATTTGATTACCAAGATAACTGTCTAGACTCTAGAAATCAGTCGACTGTGAA CTTAGTCGCTGCCAAAGCTCGTGTAGGAAGCAGTCCTGATGAGATTCTTCTGTCTTTGGCGGACGAACAAGTGTGCGATAACATTGAGGTTTCTAATGAT CTTGTTGACAAATTGCTCCTCCGCTTTAAGGATGATTGGAAATCTGCTTTGGGTGTTTTTAGATGGGCTGGATTACGCCCTGGCTACAAACATAGACCCG AGGCATATGATATGATGGTGGACATTCTGGGGAAAATGAAACAAATGGATCAAATGAGGGAGTTATTAGAGGAAATGAATCGAAATCATCTAGTTACACT TAACACTGTGGGTAAGGCTATGAGAAGGTTTTCGGGGGCAGGAAAATGGGAAGATGCTGTGAGGATGTTTGACGAGTTAGGAACATTTGGTTTGGAGAAG AATGCGGAGTCTATGAACTTGTTGCTCGACACGCTTTGCAAGGAGGGCAAAGTTGAGCAGGCCCGCGCTATCTTCTTGGAGCTTAAATCACACATTTTGC CTAATGCTCACACATTTAACATTTTTATTCATGGTTGGTGTAAAGCCAATCTAGTTGATGAAGCACACTGGACTCTCCAAGAGATGAAAGGGCATGCTTT TCGACCTTGTGTAATCAGCTACTCTACCATCATCCTATTCTATTGCCGCCAGCACAATTTTTCTAAGGTCTATGAGCTCCTTGATGAAATGGAAGCGCAA GGGTGCCCACCAAATGTTGTCACTTACACCACCATCATTGTTTTTCTGGCCAAGTCACAGAATACCGAGGAGGCTTTACAACTAACTCAGAGAATGAAGT CAGCCGGATGTAAACCTGATACACCTTTTTTCAATTCTTTGATTTATATATTAGGGAGAGCTGGCCGATTTCAGGAGGCTGTTGATGTTTTTGAGAAGGA GATGCCAAATGCCGGGGTCTCCCGTGATACATCTACTTATAATTCCATGATTGCTATGCTCTGTCATCATGGTCATGTATCAAAGGCCCTTAGTCTTCTG AGGGAGATGGAAACATCGGCACCTTTCAAACTTGATGGTCAGACATTCTACCCATTGCTTAAGTCATGCCTTAGAACTGGAGACATGAATTTGTTGAGTC AATTATTGGATGACATGGTGAAAAAGCATCAACTAAGTCTTGATAGATCAGCCTATGCTCTTCTAATTCATGGCCTCTGCAGAGCAAACAAATGCCAGTG GGCTTACCATCTGTTTGAGGAAATGATCAGTAAAGATATAGTACCGAAATATCAAACATGTCATATGCTTTTGGAGGAGGTCAAACTGAAGAGTATGTAT GATACTGCTGAGAAAATTGAAGATTTCATGAAAAAATTATAA
AA sequence Show only first row Show all	>Potri.010G055500.1 pacid=42800240 polypeptide=Potri.010G055500.1.p locus=Potri.010G055500 ID=Potri.010G055500.1.v4.1 annot-version=v4.1 MNRVQVLRSCLRNARVVFSRADYCSLAVSSSSSSCVSPPQLPSVLTSTTVFDYQDNCLDSRNQSTVNLVAAKARVGSSPDEILLSLADEQVCDNIEVSND LVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPEAYDMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELGTFGLEK NAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQ GCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLL REMETSAPFKLDGQTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMISKDIVPKYQTCHMLLEEVKLKSMY DTAEKIEDFMKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.010G055500 [exp]	0	1
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	6.24	0.8175
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	10.90	0.8474
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	11.48	0.8230
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	12.32	0.8412
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	18.33	0.8150	Pt-PHYB.1
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.013G054300 [exp]	20.49	0.8159
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	21.21	0.8405
AT1G79020			Enhancer of polycomb-like tran...		Potri.014G000600 [exp]	23.55	0.8157
AT1G72390			unknown protein		Potri.001G165800 [exp]	27.36	0.8287
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	27.38	0.8318

Compare expression of checked genes

Potri.010G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.