Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) AT3G04140 456 / 7e-153 Ankyrin repeat family protein (.1) AT5G60070 77 / 1e-14 ankyrin repeat family protein (.1) AT2G31820 73 / 4e-13 Ankyrin repeat family protein (.1) AT1G07710 71 / 1e-12 Ankyrin repeat family protein (.1) AT5G51160 66 / 4e-11 Ankyrin repeat family protein (.1) AT5G02620 66 / 5e-11 ATANK1, ANK1 ankyrin-like1 (.1) AT1G05640 62 / 9e-10 Ankyrin repeat family protein (.1) AT2G01680 61 / 1e-09 Ankyrin repeat family protein (.1) AT3G09550 56 / 9e-08 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179100 [exp] 1026 / 0 AT3G01750 579 / 0.0 Ankyrin repeat family protein (.1) Potri.001G335400 [exp] 687 / 0 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 78 / 6e-15 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 77 / 2e-14 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.005G069300 [exp] 77 / 2e-14 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 76 / 3e-14 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 76 / 3e-14 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 76 / 4e-14 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 67 / 2e-11 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041582 [exp] 578 / 0 AT3G01750 635 / 0.0 Ankyrin repeat family protein (.1) Lus10022330 [exp] 578 / 0 AT3G01750 633 / 0.0 Ankyrin repeat family protein (.1) Lus10036974 [exp] 396 / 2e-131 AT3G01750 308 / 2e-97 Ankyrin repeat family protein (.1) Lus10025289 [exp] 83 / 2e-16 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10038609 [exp] 72 / 2e-13 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10024440 [exp] 71 / 2e-12 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 70 / 2e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 69 / 6e-12 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10020209 [exp] 69 / 8e-12 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10008329 [exp] 68 / 1e-11 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.010G055700.1 pacid=42799826 polypeptide=Potri.010G055700.1.p locus=Potri.010G055700 ID=Potri.010G055700.1.v4.1 annot-version=v4.1 ATGCCACCCTCATACTTCCCTCTTAGGTGGGAAAGCACTGGAGATCAGTGGTGGTATGCGTCACCCATTGATTTCGCAGCTGCTAATGGCTACTATGACT TGGTGAGAGAGCTTATTTACCTTGACACCAATCTCCTCATCAAACTCACTTCCCTTCGTCGGATTCGTCGGCTTGAAACTGTTTGGGACGACGAGGAGCA GTTCGATGGTGTTGCTCAATGTCGTTCTCATGTAGCCAGACAGCTCCTGCTAGAATGTGAAACAAAAGGAGGTCACAACACTCTCATTAGAGCTGGACAT GGTGGTTGGCTTTTGTACACTGCTGCTTCAGCTGGTGATGGGACCTTTGTCAAGGAATTGTTGGAGAGAAACCCTCTTCTTGTTTTTGGAGAAGGAGAAT ATGGTGTCACTGACATATTTTATGCCGCGGCCAGGAGCAGGAATTCTGAGGTTTTCAGGCTCTTGCTTGATTTCTCTATTTCACCACGATGTGGCCTTGG CTCTGGAGGAGAGTTAGAGGAGCAGCAGAGTGAGAGTCATTCCGAATTTAAGTGGGAGATTATGAATAGAGCTGTCCATGCTGCAGCTAGAGGTGGGAAT TTGGAGATTTTGAAGGAGCTTCTAGGGGATTGCTCGGATGTTTTTGTTTATAGAGATGCTCAAGGGTCGACCGTCTTACATGCTGCCGCAGGGAGGGGGC AGGTCGAGGTAGTTAAGGATCTAATTACATCCTTTGATATCATTGCCTCCAAAGATTATCAAGGGAATACGGCACTGCACGTGGCTGCTTACAGGGGTTA CTTAGCTGTGGCAGAGATTTTGATACTTGCATCTCCCTCACTCGCCTCCTTTACAAACAACTATGGAGATACTTTTCTCCATATGGCAGTGTCAGGCTTC CAGACCCCTGGTTTTCGAAGAGTGGATAGGCAGATTGAGCTCTTCACTCAGTTAATGAGTGGTAAGATTGTGAATATCAAAGATATCACCAATGTCAAGA ACAACGATGGAAGAACAGCCCTTCATACCATCAATCAACTTAATATTAGTGACATGGACGCCATGACTCCACTAGATCTCCTCAAGCAACGGCCAAGATC AGCATCTTCTGAAATTCTAATCAAGCAGCTGATTTCAGCTGGAGGGATCTCTTATCCTCAGGATAACATAGCCAGAAAAGCTATTGTTTCCCATCTGAAA GGGCATGGTATAGGAAAGAGTCCTGGCACTTCTTTTAGAATTCCAGATGCAGAGGTGTTCTTGTACACTGGTATTGAGAACGCATCTGATGCCAGTTGCG ATCACAGAAGTGTTGGTGACAATTCATGCTTGAGTGGCCCAAGTGATATTGACACGGGTAACTCGTCGGAAAACAAAAAATCAGGTTCTGTAAATAATGC TGCAAGGCGTCTGAGGTCTCTCCTTCAGTTGCCCAGGAGGAAAGAGAAAAAAGCTGCTGTGATGGAGTTAGAAGATGATGACTCTGTAAACTCATTTAAT TTATGCCAAACCTTGGAAGACCGTCCAATTCCTCTCCGGCAGAGATACTCAAAACTGTTTTCCCTCTCAACCAACAAAAGAACAATTTCTGGAAGGAGCG GTCTTCCAAGTCCATCACCTGGAAAGAAATTTACCACGGGGCTAATGCATGGAGCTATTCAAGCAAATACACATTTAGCTGTTTCAGATAGATCGCCTTC AAGTTCATTTTCAGGGTCATCCCTGTCCTCGCCCGTTTCAATGGATAAAGAAAAGGATATTGATATTGCAGGAACCTCTTTCTCAAATCAGCCATCGAAG CATAAACAAGCATCCTTCAACAAGAAGTCGATGAACCAGTATTTTTGCTTTATTGCTCAAGGGCTAGCAGTGGAAGATTCAGGGACGAATCAGAGCTACA AGCATGCCACTCCTTTAGTAGCCTGA
AA sequence Show only first row Show all	>Potri.010G055700.1 pacid=42799826 polypeptide=Potri.010G055700.1.p locus=Potri.010G055700 ID=Potri.010G055700.1.v4.1 annot-version=v4.1 MPPSYFPLRWESTGDQWWYASPIDFAAANGYYDLVRELIYLDTNLLIKLTSLRRIRRLETVWDDEEQFDGVAQCRSHVARQLLLECETKGGHNTLIRAGH GGWLLYTAASAGDGTFVKELLERNPLLVFGEGEYGVTDIFYAAARSRNSEVFRLLLDFSISPRCGLGSGGELEEQQSESHSEFKWEIMNRAVHAAARGGN LEILKELLGDCSDVFVYRDAQGSTVLHAAAGRGQVEVVKDLITSFDIIASKDYQGNTALHVAAYRGYLAVAEILILASPSLASFTNNYGDTFLHMAVSGF QTPGFRRVDRQIELFTQLMSGKIVNIKDITNVKNNDGRTALHTINQLNISDMDAMTPLDLLKQRPRSASSEILIKQLISAGGISYPQDNIARKAIVSHLK GHGIGKSPGTSFRIPDAEVFLYTGIENASDASCDHRSVGDNSCLSGPSDIDTGNSSENKKSGSVNNAARRLRSLLQLPRRKEKKAAVMELEDDDSVNSFN LCQTLEDRPIPLRQRYSKLFSLSTNKRTISGRSGLPSPSPGKKFTTGLMHGAIQANTHLAVSDRSPSSSFSGSSLSSPVSMDKEKDIDIAGTSFSNQPSK HKQASFNKKSMNQYFCFIAQGLAVEDSGTNQSYKHATPLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	0	1
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	2.23	0.9420
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	3.87	0.9285
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	4.89	0.9292
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	7.34	0.9244
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	8.77	0.9267
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	8.94	0.9291
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	9.69	0.9344
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	10.95	0.9239
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	13.41	0.9189
AT5G12260			unknown protein		Potri.009G066900 [exp]	14.07	0.9160

Compare expression of checked genes

Potri.010G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.