Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67630 837 / 0 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178951 [exp] 186 / 4e-56 AT1G67630 108 / 2e-28 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Potri.010G096301 [exp] 77 / 1e-16 AT1G67630 59 / 7e-11 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036982 [exp] 888 / 0 AT1G67630 765 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10015820 [exp] 839 / 0 AT1G67630 738 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10015818 [exp] 64 / 2e-10 AT1G27880 434 / 2e-141 DEAD/DEAH box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF04042 [poplar] [flax] DNA_pol_E_B DNA polymerase alpha/epsilon subunit B CL0021 [poplar] [flax] OB PF08418 [poplar] [flax] Pol_alpha_B_N DNA polymerase alpha subunit B N-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G055900.1 pacid=42799941 polypeptide=Potri.010G055900.1.p locus=Potri.010G055900 ID=Potri.010G055900.1.v4.1 annot-version=v4.1 ATGGAAGAGGAAATCAAAGAAGAATTTAAGAAGAGCGGGTTCTCTCTAGACGATGAAGAAGAAGTCCTCAAGAAATGTCTTACTTTCTGTATAAATTACA ATCTGAAGCCATCAGACCTCGTCTCGAGCTGGGAGGTTTACTATCTCAATAGGCTACTTGATGAATCGACGGTTCGAAATGCTGAAATGGATGGGTTTTT GTTGCACCTGCAGAATGAACAGAAAGAAGCTGTTGTTAAAGAGGAACCCAATTTGTACATCTATTCAAGCAAAGATGTGGACATGATCTTGAATTACGAT GAAGAAGATTTGAAAGAAGAAGTTCCCGGGACTCCAACAGACAAATCATTAAAACTCAACTCAGAGCCATTCAATTCACCACCCAAATCGTATGGAAATG GTTATTCTTCTGGGAAACCATCAAAACTTGTGACACCCTTTGGACGGCGGACTGATAAGTTTGTGGTCAAATTCAACATCAATAGCCTTCCTGTGGTGGA GAACAATGATGGTGAGCATGACCATGGGAATCTTGAGGATGAAATTATTAAGAGGGCTCAACCCTGCAAGAGGTGTTCTTTGATGGTCCATAGATTGGGG CCAGAACCTGGTTGCAGGTTCATGTATGACAAGATTGAAGATAGGTTTAATGCACTTGAAAATCGCATTAGAAAGCATGCAATTGCACTCTTTGCTTCTG GGCTGTACGAGGAACCAATGGACCCAACAGTTGCTTCACAGAGAAATATATTTGCTGTCGGAATGATCTGTTGTGATGGAGAAGGGCGTTTAAATGAGAA ATCCATCATGTTGCAAAGCAGTGTTGAGCATTCTGGAGGCCGCAATGTTCGTTTAGAATTGCATAACTTGAGCCAGTTCTCCATTTTTCCAGGACAGATT GTAGGTATTGAAGGTCAAAATCCTAGTGGACATTGTTTGATTGCATCTAAACTGGTGGACTCAGTTCCTTTATCTGCCACTGTTGCTGTGAATCAGCATC CTACAAAGAAGCAAGCTTTGGATCTGGTGGTTGAGTCAACCGATTCTTCTTATGTACAAAAAGAGATATCAGCTCTTATTGCTTCGGGCCCTTTCACCAC AACAGACAACTTATTCTTTGAGCCTCTGACAGAGCTGCTTGCATATGCAGGCAGAAAGTTACCACAATTACTTGTACTGATGGGACCATTCATCGATTCT GAACATCCAGAGGTTAAGAAAGGGGCTGTAGACAGGAGCTTTGATGAGTTGTTTTGTCAGGAAATTCTGAGAAGGTTGCAAGACCATGTGGAATATGCTG GCTCTAATGTGCGTGTGATTCTTGTTCCATCTATACGGGATGCTCAGCATGATTTTGTTTTCCCACAGCCTGCTTTTGATATTCATCTCCCCAATCTCGA ACATCAGATAACCGGTCTCACAAATCCAGGAATTTTTGAAGCAAATCAGGTCAAAGTAGGCTGCTGCACAGTGGACATTCTAAAACAGATAAGCGGAGAG GAGATGTCACGAAATCCAACAGATGGAACACCCAGTGATCGAATGAGTAGACTTGCGAACCATATTATCAGTCAGCGCAGCTTTTATCCTCTATATCCGC CAGCTGAAGACGTTCCATTGGACTTTTCACTTGCTCCAGAAGCTCTTCACATTAACTCTATTCCAGATATTCTCATCCTGCCTTCAGATATGAAGTACTT TATGAAGGTGTTGACCCTTGGTGAAGGGGAAGAGCAAAGGAAGTGCATTTGCATAAACCCAGGAAGACTGGCAAAGGGAGAGGGAGGTGGGACTTTTGCA GAGCTTAACTACCAAGGGAGTCCTGACAAGATGAATGCTTCAATTATAGGCATATAA
AA sequence Show only first row Show all	>Potri.010G055900.1 pacid=42799941 polypeptide=Potri.010G055900.1.p locus=Potri.010G055900 ID=Potri.010G055900.1.v4.1 annot-version=v4.1 MEEEIKEEFKKSGFSLDDEEEVLKKCLTFCINYNLKPSDLVSSWEVYYLNRLLDESTVRNAEMDGFLLHLQNEQKEAVVKEEPNLYIYSSKDVDMILNYD EEDLKEEVPGTPTDKSLKLNSEPFNSPPKSYGNGYSSGKPSKLVTPFGRRTDKFVVKFNINSLPVVENNDGEHDHGNLEDEIIKRAQPCKRCSLMVHRLG PEPGCRFMYDKIEDRFNALENRIRKHAIALFASGLYEEPMDPTVASQRNIFAVGMICCDGEGRLNEKSIMLQSSVEHSGGRNVRLELHNLSQFSIFPGQI VGIEGQNPSGHCLIASKLVDSVPLSATVAVNQHPTKKQALDLVVESTDSSYVQKEISALIASGPFTTTDNLFFEPLTELLAYAGRKLPQLLVLMGPFIDS EHPEVKKGAVDRSFDELFCQEILRRLQDHVEYAGSNVRVILVPSIRDAQHDFVFPQPAFDIHLPNLEHQITGLTNPGIFEANQVKVGCCTVDILKQISGE EMSRNPTDGTPSDRMSRLANHIISQRSFYPLYPPAEDVPLDFSLAPEALHINSIPDILILPSDMKYFMKVLTLGEGEEQRKCICINPGRLAKGEGGGTFA ELNYQGSPDKMNASIIGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	0	1
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	2.00	0.9338	Pt-CPP1.22
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	2.00	0.9310
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	2.82	0.9480
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	5.19	0.9319
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	6.32	0.9107	CPE902,Pt-SMC2.2
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	7.07	0.9257	Pt-RANGAP1.1
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	8.12	0.9236
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	8.48	0.9071	DMT901,Pt-MET1.2
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	10.19	0.9148
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	10.39	0.8769	BGAL1.1

Compare expression of checked genes

Potri.010G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.