Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 127 / 1e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 124 / 1e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 122 / 3e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 117 / 1e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 115 / 5e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 115 / 5e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 115 / 6e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 113 / 2e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 112 / 4e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178700 [exp] 553 / 0 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 124 / 3e-33 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 120 / 8e-32 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 117 / 6e-31 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 115 / 4e-30 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 114 / 9e-30 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 112 / 4e-29 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 110 / 2e-28 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G059100 [exp] 110 / 3e-28 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036980 [exp] 457 / 7e-163 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 442 / 3e-154 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020265 [exp] 122 / 1e-32 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 117 / 6e-31 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006698 [exp] 117 / 2e-30 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004984 [exp] 116 / 2e-30 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 112 / 7e-29 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006699 [exp] 111 / 2e-28 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 110 / 4e-28 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 110 / 4e-28 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.010G056100.1 pacid=42800127 polypeptide=Potri.010G056100.1.p locus=Potri.010G056100 ID=Potri.010G056100.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTTCCCTTGCCGGATCCAATGTCGTCGCCTACAGATCCGCCGCTCATTTCCCCACCTCCGCTGATACAAGAATCGCTCACTTTCGCC CTTTCTCTACAGTTTCCGCTGGAGTCGGGCATCGCATTTCTCTCCAGTGTAGATCGAGGAGCTCATTTGCTTCTTCTGGTGTAAGAGCTCAGGTTGCGAC TTCTGAAAAAGCGAGCGCAGAGGCGGCACAGAAGGTGCAATCACCGGTAGTGGTAGTGACTGGAGCCTCTAGAGGTATTGGCAAAGCAATTGCTCTGTCT TTGGGAAAAGCAGGTTGCAAGGTCTTGGTTAATTATGCTAGGTCTTCAAAGGAAGCTGAGGAAGTTTCCAAAGAGATTGAGGCTTATGGTGGTCAGGCCC TCACTTTTGGGGGTGATGTTTCAAAAGAGGCTGATGTGGAATCAATGATGAAAACTGCTGTTGATGCATGGGGAACCGTTGATATACTGATAAATAATGC AGGAATTACACGGGATACATTGCTGATGAGAATGAAGAAATCTCAGTGGCAGGAGGTTATTGATCTTAATCTCACTGGTGTATTCCTTTGTACACAGGCA GCAGCCAAAATTATGATGAAAAAGAGAAAGGGAAGGATTATTAACATAGCATCAGTTGTTGGTTTGGTTGGCAATGCCGGGCAAGCCAACTATAGTGCTG CAAAGGCAGGAGTTATTGGCCTGACAAAGACTGTTGCAAAGGAATATGCAAGCAGAAACATTAATGTAAATGCTGTGGCCCCAGGATTCATTGCATCTGA TATGACTGCCAAGCTTGGAGATGATATTGAAAAGAAAATCTTGGAAACAATCCCTTTGGGACGTTATGGCCAACCAGAAGAGGTTGCAGGACTAGTGGAA TTCCTGGCTCTTAATCCCGCCTCCAGTTACATCACTGGACAGGTGTTCACTATTGATGGAGGAATGGTAATGTAA
AA sequence Show only first row Show all	>Potri.010G056100.1 pacid=42800127 polypeptide=Potri.010G056100.1.p locus=Potri.010G056100 ID=Potri.010G056100.1.v4.1 annot-version=v4.1 MAAAASLAGSNVVAYRSAAHFPTSADTRIAHFRPFSTVSAGVGHRISLQCRSRSSFASSGVRAQVATSEKASAEAAQKVQSPVVVVTGASRGIGKAIALS LGKAGCKVLVNYARSSKEAEEVSKEIEAYGGQALTFGGDVSKEADVESMMKTAVDAWGTVDILINNAGITRDTLLMRMKKSQWQEVIDLNLTGVFLCTQA AAKIMMKKRKGRIINIASVVGLVGNAGQANYSAAKAGVIGLTKTVAKEYASRNINVNAVAPGFIASDMTAKLGDDIEKKILETIPLGRYGQPEEVAGLVE FLALNPASSYITGQVFTIDGGMVM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.010G056100 [exp]	0	1
AT1G25240			ENTH/VHS/GAT family protein (....		Potri.008G140100 [exp]	11.66	0.6602
AT5G65360			Histone superfamily protein (....		Potri.001G016900 [exp]	13.71	0.7085
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.008G178700 [exp]	14.14	0.6823
AT3G25100		CDC45	cell division cycle 45 (.1)		Potri.015G090600 [exp]	20.59	0.6860
AT5G10750			Protein of unknown function (D...		Potri.018G014234 [exp]	22.51	0.5431
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	32.40	0.6662
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	33.00	0.6489
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	47.89	0.6066
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	50.29	0.6245
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	51.65	0.5976	TSO1.2

Compare expression of checked genes

Potri.010G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.