Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27850 239 / 2e-64 unknown protein AT2G40070 77 / 4e-14 unknown protein AT3G08670 60 / 8e-09 unknown protein AT3G09000 55 / 3e-07 proline-rich family protein (.1) AT2G38160 45 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178600 [exp] 1632 / 0 AT1G27850 567 / 0.0 unknown protein Potri.008G066900 [exp] 85 / 1e-16 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 85 / 2e-16 AT2G40070 368 / 6e-121 unknown protein Potri.016G139500 [exp] 65 / 3e-10 AT3G08670 245 / 2e-73 unknown protein Potri.010G177000 [exp] 62 / 1e-09 AT2G40070 82 / 9e-17 unknown protein Potri.016G114900 [exp] 59 / 2e-08 AT2G40070 352 / 7e-114 unknown protein Potri.006G110700 [exp] 47 / 6e-05 AT3G08670 251 / 1e-75 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011374 [exp] 841 / 0 AT2G40070 151 / 8e-37 unknown protein Lus10006433 [exp] 824 / 0 AT1G27850 501 / 1e-158 unknown protein Lus10030402 [exp] 81 / 5e-15 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 73 / 7e-13 AT2G40070 533 / 0.0 unknown protein Lus10021382 [exp] 64 / 7e-10 AT3G08670 432 / 4e-145 unknown protein Lus10035528 [exp] 62 / 3e-09 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 60 / 1e-08 AT2G40070 288 / 5e-86 unknown protein Lus10024526 [exp] 58 / 3e-08 AT2G40070 66 / 2e-11 unknown protein Lus10004390 [exp] 57 / 4e-08 AT2G40070 321 / 5e-107 unknown protein Lus10002493 [exp] 57 / 6e-08 AT2G40070 300 / 2e-95 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G056200.3 pacid=42797101 polypeptide=Potri.010G056200.3.p locus=Potri.010G056200 ID=Potri.010G056200.3.v4.1 annot-version=v4.1 ATGCCGCCTTCTCCGGCATTGAGATATTCTCCTGGGAGAGAGCCAAGAGCAGAAAATCATAAGCGAGGGCGTAGCCTTGAAGGTGGATTGCTCTTCAAAG AGAAAGATGAGGATCTTGCTCTGTTCAATGAAATGCAGTCTAGAGAAGGAGAGAATTTCTTGCTTCAGTCAGCTGATGACTTTGAAGACTCATTCTCCAC AAAGTTGAGATACTTTTCAGACTTAAAACTTGGAGTTTCCATCCCTGTTCGAGGAGAGAGTAGTGAACTTCTTAATGTAGATGGGGAGAAGAATGACTAT GACTGGTTATTAACTCCTCCTGAGACCCCGCTTTTTCCTTCTTTGGATGATGAACCCCCACCAGTTAATGTTGCATCCAGGGGCAGACCTCGTAGTCAAC CCATTTCCATATCGAGATCTTCGACGATGGAGAAGAGTCACAGGAGCAGTAGGGGCAGTGCAAGTCCAAATCGCTTAAGCCCTTCCCCGCGTTCTGGTAA TAGTACATTTCAGTCGAGAGGAAGGCCATCGTCGGCATCTTATTCTAGTCCAACTCCTAGTCAACGGGCTTCCACTCCATCACGTAGACCATCTCCTCCT CCGAGTAAAGCCTCAACACCCGCTCCAAGGTCTTCTACTCCAACTCCAAGGAGGATGAGCACAGGATCGGGGGCAAGGGGAACTTCCCCCATAAGGACAA GTAGAGGGAACTCTGCCTCACCAAAAATAAGGGCATGGCAGTCAAATATTCCTGGTTTCTCCTCTGAAGCACCACCGAATCTTCGCACTTCTCTGGCAGA TCGGCCAGCATCATATGTAAGGGGTTCCTCTCCAGCATCCAGAAATAGTAGGGACTCGGGCTCAAAATTTGGCAGGCAATCAATGTCTCCAGCCTCTAGA AGTGTCAGTTCATCACACAGTCATGATAGAGACCGAATTAGCTCACACAGCAAAGGTTCTGTGGCATCATCTGGTGATGATGATGTGGACTCTCTACAAT CCACTTATGTGGGTAGCTTAGACCACTTAGCTTCAAAGAGAACTGGTGGCTTTCCTAATAATAGAGCTCCTGCGTTCTCAAAGAACTCAACTAGAGTATT TTCCCCAAGTTCCGCTCCAAAAAAATCCTTTGACTCTGCTCTTCGTCAAATGGATCATCGGAAAAGTCCTCAGAACATGTTCAGACCACTTCTATCCAGT GTCCCCAGCACTACCTTCTATGGTGGAAAAGCAAGTTCTGCACATCGCTCTTTGATGTCGAGGAACTCTTCTGTAACAACCAGCAGTAATGCGAGTTCTG ATCAAGGTACCAGCATTGCACCTGATACCGAGGGAGGTGACCACCACCAGGAAGATATGGCAACTGAAAGTGGTAAGGTACTGCATCCTGATGCTCAGGA AGGGGTTTTTGCCTTTGATAAGGTGGATGCATTAAATAAAGATGCTGGGCATGATACAGACGATGGCCTTCACTTTCAGCTGCATGACTTGGAAAGAGAC CCCTCAATTGAATATGAACCTGGTGGTTATGAGGAGGGCAGGCACCATCATGTGGAAATCAGTTCTGCTTCTGACACTTTATGTTTCAAGGCTGATTTGT CAGAAGTTGACAGTCTAGAAAAAACAAGTGTTTGTTCTAAATGTGGTTGCAGGTATAGTGTTATTGAAACTCTGGAAAAGGATGTCAATCTCTGTCCTGA TTGCGACAATCTTGTAGGCACTGCCACTCCAGACACAGAAATAGTAGCCATTGACAGCATCCCAGTGCTGTCTATTAATATTTCTGAAGAACACCAGCCA TCTGATGAGCCAAATATCCGGATGGCTGTACCTGAATTACAGCCACAAGTTAATGATATGGAATCACAATTTGTTGAAATGGTTGATGCAAGGGTTTCCC TGCCTGAAGACAGAGTTAAGCAAGACGAGGCTTCATACCATGAGCAAAACCGTATTTATTCCCGAGAAAGTTCTCTCACGAGGTCTTTGATGGAAGGAAG TGAACATAGTGCTATTAAGCAAGGCGAGACTTCATACCATGAGCAAAACCATATTTATTCCCGAGAAAGTTCTCTCACGAGGTCTTTGATGGAAGGAAGT GAACATAGTACTGCTGGCCATCATGAAACAGGACAGCCACTTCCTGGTTATAGCCTTCCTAGCGGAGACGGTGGAGATCAGCTATTGCCTCGCTCAAATA ACTATCCAAGTTTGAAGGCTGGTGTTTCAGAAGGTGCTGGGATTTCTGTATTGCTCAAAAGGTCTAGCAGTAGCAAAGGGCCTGTTGTTCAAGGCAGGAC TTTAATTGCCTCTACCATTACTTACGATGATTTGTCGTATGCAAGAGACAGTGCAAACAGTTTTAGAAGTTCCATTGGGCATGGTAGTACATCAGCATCA TCCTCCATTGATTTCAGCACCAGCAGACAAGTTGAAACACGTGTTCAACGACAGTTAAGTGGCAGGAAATCTGACATGGAGAACTACAGATATGACCTAA GCTCAAGACCTCAAAGCACTGCATCATCTTTTTCTGGAACTTTAAATGATGGTCACCAAACTCTAGGTCTTGCAACAAACACACATGAAGAAAATGTCGA GGTTTCTGTTGGCAATATAAAATATGATGGTTTGGAGGAAACACCTGTAGCTTTTCAAAGGATATTGCTGGCTTCAGAAAATAAAGAAATGGATGTTTCT TGTATGTTTTTTACTGACGCAGCAGTTCCTGAAGAAGATTTGTTTGAGCAAAAGGACAGTAATAGAAAAACTGATGTATCTTCCTCAGATTTGCCAAGTC ATACAGTTGGGATTCGGTTGGAGGAGAATTCAGCACTATCAAATCATGGCAACTTTTCTTTATATGAAAATGGAGAAGATTTGCCAAACAATGTAGGCGA TGTCTCAGATGTAGAAGCATCAGCTCTTCCTCCAGATTCTTCTGTTGTCACAGAACAAAACATGCTAAACACCAGTCTTGACAGATTGAATGTTGCTGAG ATTCCTGCTCATAGTCGTTTGGCTTCAATATCAGAAATAGAAGTTGAGAACAATTGTCATGGTACTGGCTCAGAGAATGATGATATATTGACAAATTCAA GGAGCACCATAAGTGAAGTTCAGGATCATCCAGTCCCAACACCTTCAGATAACGAAACTCCTGCTTCTGTTTTGGAACACAACAGGCCAGATCATGCAGA TGGCATAATAGAGGAGTCAACTGTCATGGTAGACTGTCAGGTAGGGAGCAAGGCAAGAAGCCTAACCCTTGAAGAAGCAACAGATACAATACTTTTCTGT AGCTCCATTGTTCATGATCTGGCCTACCAGGCTGCAACTACAGCCATTGAAAAGGAAAGTTCAGTCCCATTGGAAGGTTCTTGGCCAACTGTTACAATTC TTGGAAAATCCACAGCTGACAGAAAGGATCCGCGTGGGAGACCTGCTGCAAAACGCACTTCAAAATCCCTAAAAGTTAGGCAAAAGCGGGCAGGAGTAGA TGCAAAACATTCTGCCAACAAGACCGAGAATGATGAGAATGCCAATGAATCTATGGTGCGTAATGTTGGGCTTCCGAACGAGATGGACATTATGAAGCCT CCTAAGTTGGAATCCAAGTGCAATTGCACGATAATGTGA
AA sequence Show only first row Show all	>Potri.010G056200.3 pacid=42797101 polypeptide=Potri.010G056200.3.p locus=Potri.010G056200 ID=Potri.010G056200.3.v4.1 annot-version=v4.1 MPPSPALRYSPGREPRAENHKRGRSLEGGLLFKEKDEDLALFNEMQSREGENFLLQSADDFEDSFSTKLRYFSDLKLGVSIPVRGESSELLNVDGEKNDY DWLLTPPETPLFPSLDDEPPPVNVASRGRPRSQPISISRSSTMEKSHRSSRGSASPNRLSPSPRSGNSTFQSRGRPSSASYSSPTPSQRASTPSRRPSPP PSKASTPAPRSSTPTPRRMSTGSGARGTSPIRTSRGNSASPKIRAWQSNIPGFSSEAPPNLRTSLADRPASYVRGSSPASRNSRDSGSKFGRQSMSPASR SVSSSHSHDRDRISSHSKGSVASSGDDDVDSLQSTYVGSLDHLASKRTGGFPNNRAPAFSKNSTRVFSPSSAPKKSFDSALRQMDHRKSPQNMFRPLLSS VPSTTFYGGKASSAHRSLMSRNSSVTTSSNASSDQGTSIAPDTEGGDHHQEDMATESGKVLHPDAQEGVFAFDKVDALNKDAGHDTDDGLHFQLHDLERD PSIEYEPGGYEEGRHHHVEISSASDTLCFKADLSEVDSLEKTSVCSKCGCRYSVIETLEKDVNLCPDCDNLVGTATPDTEIVAIDSIPVLSINISEEHQP SDEPNIRMAVPELQPQVNDMESQFVEMVDARVSLPEDRVKQDEASYHEQNRIYSRESSLTRSLMEGSEHSAIKQGETSYHEQNHIYSRESSLTRSLMEGS EHSTAGHHETGQPLPGYSLPSGDGGDQLLPRSNNYPSLKAGVSEGAGISVLLKRSSSSKGPVVQGRTLIASTITYDDLSYARDSANSFRSSIGHGSTSAS SSIDFSTSRQVETRVQRQLSGRKSDMENYRYDLSSRPQSTASSFSGTLNDGHQTLGLATNTHEENVEVSVGNIKYDGLEETPVAFQRILLASENKEMDVS CMFFTDAAVPEEDLFEQKDSNRKTDVSSSDLPSHTVGIRLEENSALSNHGNFSLYENGEDLPNNVGDVSDVEASALPPDSSVVTEQNMLNTSLDRLNVAE IPAHSRLASISEIEVENNCHGTGSENDDILTNSRSTISEVQDHPVPTPSDNETPASVLEHNRPDHADGIIEESTVMVDCQVGSKARSLTLEEATDTILFC SSIVHDLAYQAATTAIEKESSVPLEGSWPTVTILGKSTADRKDPRGRPAAKRTSKSLKVRQKRAGVDAKHSANKTENDENANESMVRNVGLPNEMDIMKP PKLESKCNCTIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27850			unknown protein		Potri.010G056200 [exp]	0	1
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	1.00	0.9589
AT2G31930			unknown protein		Potri.009G024700 [exp]	2.00	0.9441
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	3.87	0.9330
AT1G28280			VQ motif-containing protein (....		Potri.001G399100 [exp]	5.09	0.9108
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	5.19	0.9261
AT3G26890			unknown protein		Potri.001G324700 [exp]	6.48	0.9217
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	7.21	0.9365
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.006G101300 [exp]	7.34	0.9175
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	7.48	0.9288
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	9.79	0.8997

Compare expression of checked genes

Potri.010G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.