Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 347 / 5e-116 HXXXD-type acyl-transferase family protein (.1) AT5G47950 284 / 9e-92 HXXXD-type acyl-transferase family protein (.1) AT1G24420 277 / 5e-89 HXXXD-type acyl-transferase family protein (.1) AT4G15390 277 / 9e-89 HXXXD-type acyl-transferase family protein (.1) AT3G30280 275 / 5e-88 HXXXD-type acyl-transferase family protein (.1) AT5G47980 275 / 6e-88 HXXXD-type acyl-transferase family protein (.1) AT1G24430 245 / 1e-76 HXXXD-type acyl-transferase family protein (.1) AT4G15400 238 / 1e-73 HXXXD-type acyl-transferase family protein (.1) AT5G23970 232 / 9e-72 HXXXD-type acyl-transferase family protein (.1) AT5G48930 123 / 6e-31 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056400 [exp] 848 / 0 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 843 / 0 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 402 / 2e-137 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 394 / 9e-135 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 333 / 2e-110 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 310 / 1e-101 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 271 / 2e-86 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 269 / 5e-86 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 269 / 9e-86 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036929 [exp] 301 / 6e-96 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 261 / 2e-82 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 256 / 1e-80 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 254 / 5e-80 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 246 / 8e-77 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 233 / 2e-71 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10023214 [exp] 213 / 5e-64 AT3G26040 218 / 7e-66 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 206 / 2e-61 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 196 / 8e-58 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 198 / 6e-57 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G056300.1 pacid=42797417 polypeptide=Potri.010G056300.1.p locus=Potri.010G056300 ID=Potri.010G056300.1.v4.1 annot-version=v4.1 ATGTCTGTGCCTATGAGAATCGAGATCATGCAGAGAGAAACCATCAAACCATCCTCTCCAACGCCCCTTCACTTAAGAAGTCTCAAGCTCTCTCTTCTGG ACCAATTCATGCCAGTAGGTCACATTCCCCTGCAGCTATTTTACCCCAGGAATGGAAACGACACAGATCACCTTGCCAAAGCCACGGAAAGGTCACTGCT ACTAAAGACCTCACTGTCTGAAGCCTTGACTCATTTTTATCCATTCGCAGGCAGACTCAAAGACAATTCGTCCATTGAATGTGATGACCATGGGGCTGAA TATATTGAGGCTCGAATCCATTGTATTCTCTCTGATATTCTCAAAAAACCTGATACTGAAGTGCTAAAACAACTCATGCCTGCAGCTGTAAGTGAACCAG CCACGGCCAGGGATAGTCAATTAATTGTCCAAGCTAGTTTCTTTGATTGTGGTGGCTTGGCAATTGGCGTGAATCTTTCTCACAAGGTTGCAGATGCAGC CACGCTAACATCATTCATCAAGTGCTGGGCTGCAACCGCTCGCAGGTCGAGTACTGAGGTGGTGATCAGTCCAGTGTTCATGGGTGCTTCTATTTTCCCA CAAATGGATTTACCAATCTCAATGCTTCCAGTAGATTTGATTCAAGGAGAGTCTGTCATGAAAAGGTTTGTGTTTGAAGCTCCCAAAATTACTGCTCTCA AGGCTAAAGCCATCAGTGCAAGCGTGCCAGATCCAACACGGGTGGAATCTGTAACAGCGTTGATCTGGAAATGTGCGATGAGCGCATCAAGATCAAACTT GGGGGTTCCTAGAAAAGCTGTGTTGTCTCTTGGAGTGAATATTCGGAAGAGGCTTGTGCCAACCTTACCAGACAACTACGGTGGGAACTACGTAGGTAGT ATATCAGCGCGGATAGAGGATCATGATGATTTAGAATTGCAAGGTATAGTGAGCCGTATAAGGAAAGATCTTATAGAGTTTGGTGAAAATTATGCTAAAA TAACCCAAGGGGACGATACTTCGTTAGCAATTTGCAAGGCGGTAGAAGAGTTTGGAAAGATGGCCATGAGCAAAGATATTGACTCCTATAACGGCACCAG TTGGTGTAGATTTGAACTTTATGATGCTGATTTCGGATGGGGAAAACCAACATGGTTGAGCAATGTTTTCACTATAGAGCTGAAAAATATTATGTGTTTG ATGGACACAAGGGATGGTGATGGAATAGAAGCGTGTATAAGTTTGAGTCGAGAAGACATGGCCTTGTTCGAATCCAACAAGGAGCTGCTTGAATTTGCTG CTGCAAATCCTAGTGTATCAGTTTAG
AA sequence Show only first row Show all	>Potri.010G056300.1 pacid=42797417 polypeptide=Potri.010G056300.1.p locus=Potri.010G056300 ID=Potri.010G056300.1.v4.1 annot-version=v4.1 MSVPMRIEIMQRETIKPSSPTPLHLRSLKLSLLDQFMPVGHIPLQLFYPRNGNDTDHLAKATERSLLLKTSLSEALTHFYPFAGRLKDNSSIECDDHGAE YIEARIHCILSDILKKPDTEVLKQLMPAAVSEPATARDSQLIVQASFFDCGGLAIGVNLSHKVADAATLTSFIKCWAATARRSSTEVVISPVFMGASIFP QMDLPISMLPVDLIQGESVMKRFVFEAPKITALKAKAISASVPDPTRVESVTALIWKCAMSASRSNLGVPRKAVLSLGVNIRKRLVPTLPDNYGGNYVGS ISARIEDHDDLELQGIVSRIRKDLIEFGENYAKITQGDDTSLAICKAVEEFGKMAMSKDIDSYNGTSWCRFELYDADFGWGKPTWLSNVFTIELKNIMCL MDTRDGDGIEACISLSREDMALFESNKELLEFAAANPSVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056300 [exp]	0	1
AT5G61820			unknown protein		Potri.015G108800 [exp]	3.16	0.9105
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	7.34	0.8816
AT4G10265			Wound-responsive family protei...		Potri.013G148300 [exp]	8.12	0.8456
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112200 [exp]	14.69	0.8553
AT5G44440			FAD-binding Berberine family p...		Potri.011G162828 [exp]	15.29	0.8579
AT2G38790			unknown protein		Potri.008G025200 [exp]	15.68	0.8652
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412300 [exp]	15.71	0.8551
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	16.24	0.8625
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	16.27	0.8654
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	16.43	0.8568

Compare expression of checked genes

Potri.010G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.