Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 354 / 6e-119 HXXXD-type acyl-transferase family protein (.1) AT1G24420 283 / 4e-91 HXXXD-type acyl-transferase family protein (.1) AT5G47950 282 / 6e-91 HXXXD-type acyl-transferase family protein (.1) AT4G15390 276 / 1e-88 HXXXD-type acyl-transferase family protein (.1) AT3G30280 272 / 5e-87 HXXXD-type acyl-transferase family protein (.1) AT5G47980 271 / 2e-86 HXXXD-type acyl-transferase family protein (.1) AT1G24430 245 / 9e-77 HXXXD-type acyl-transferase family protein (.1) AT4G15400 239 / 2e-74 HXXXD-type acyl-transferase family protein (.1) AT5G23970 225 / 7e-69 HXXXD-type acyl-transferase family protein (.1) AT5G48930 129 / 5e-33 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056450 [exp] 859 / 0 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 848 / 0 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 397 / 1e-135 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 390 / 3e-133 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 336 / 1e-111 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 314 / 4e-103 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 270 / 2e-86 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 268 / 1e-85 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 268 / 1e-85 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036929 [exp] 301 / 6e-96 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 263 / 2e-83 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 263 / 4e-83 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 256 / 7e-81 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 249 / 4e-78 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 236 / 1e-72 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10023214 [exp] 213 / 8e-64 AT3G26040 218 / 7e-66 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 199 / 1e-58 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 195 / 4e-57 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 197 / 7e-57 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G056400.2 pacid=42797329 polypeptide=Potri.010G056400.2.p locus=Potri.010G056400 ID=Potri.010G056400.2.v4.1 annot-version=v4.1 ATGTCTGTGCCACTGAGAATCGAGATCATGCAGAGAGAAACCATCAAACCATCCTCTCCAACGCCCCTTCACTTAAGAAGTCTCAAGCTCTCTCTTCTGG ACCAGTTCATGCCAGTAGTTCACATTCCACTGCTTCTATTTTACCCCAGGAATGGAAACGACACAGATCACCTTGCCAAAGCCACGGAAAGGTCACTGCT ACTAAAGACCTCGCTGTCTGAAGCCTTGACTCATTTTTATCCATTCGCAGGCAGACTCAAAGACAACTCGTCCATTGAATGTGATGACCATGGGGCTGAA TATATTGAGGCTCGAATCCATTGTATTCTCTCTGATATTCTCAAAAAGCCTGATACTGAAGTGCTAAAACAACTCCTGCCTGCAGCTCTAAGTGAAGCAG CCACGGCCAGGGATAGTCAATTACTTGTCCAAGCTAGTTTCTTTGATTGTGGTGGCTTGGCAATTGGGGTGAATCTTTCTCACAAGGTTGCAGATGCAGC CACGGTAACATCATTCATCAAGTGCTGGGCTGCAACCGCTCGCAGGTCGAGTACTGAGGTGGTGATCAGTCCAGTGTTCATGGGTGCTTCCATTTTCCCA CAAATGGATTTACCAATCCCAATGCTTCCAGTAGATTTGATTCAAGGAGAGTCTGTCATGAAAAGGTTTGTGTTTGAAGCTCCCAAAATTACTGCTCTCA AGGCTAAAGCCATCAGTGCAAGCGTGCCAGATCCAACACGGGTGGAATCTGTAACAGCGTTGATCTGGAAATGTGCGATGAGCGCATCCAGATCAAACTT GGGGGTTCCTAGAAAATCGGTGTTGTCTCTTGGCGTGAATATTCGGAAGAGGCTTGTGCCAACCTTACCAGACAACTACGGTGGGAACTACGTAGGTAGT ATATCAGCGCGGATGGAGGATCATGATGATTTAGAATTGCAAGGTATAGTGAGCCGTATAAGGAAAGATCTTATAGAGTTTGGTGAAAATTATGCTAAAA TAACCCAAGGGGACGATACTTCGTTAGCAATTTGCAAGGCGGTAGAAGAGTTTGGAAAGATGGCCACGAGCAAAGATATTGACTACTATAACGGCACCAG TTGGTGTAGATTTGAACTTTATGATGCTGATTTCGGATGGGGAAAACCAACATGGTTGAGTACTGTTTTCACTATAGAGCTGAAAAATCTTATGTGTTTG ATCGACACAAGGGATGGTGATGGAATAGAAGCGTGTATAAGTTTGAGTCCAGAAGACATGGCCTTGTTCGAATCCAACAGGGAGCTGCTTGAATTTGCTG CTGCAAATCATAGCGTATCAGTTTAG
AA sequence Show only first row Show all	>Potri.010G056400.2 pacid=42797329 polypeptide=Potri.010G056400.2.p locus=Potri.010G056400 ID=Potri.010G056400.2.v4.1 annot-version=v4.1 MSVPLRIEIMQRETIKPSSPTPLHLRSLKLSLLDQFMPVVHIPLLLFYPRNGNDTDHLAKATERSLLLKTSLSEALTHFYPFAGRLKDNSSIECDDHGAE YIEARIHCILSDILKKPDTEVLKQLLPAALSEAATARDSQLLVQASFFDCGGLAIGVNLSHKVADAATVTSFIKCWAATARRSSTEVVISPVFMGASIFP QMDLPIPMLPVDLIQGESVMKRFVFEAPKITALKAKAISASVPDPTRVESVTALIWKCAMSASRSNLGVPRKSVLSLGVNIRKRLVPTLPDNYGGNYVGS ISARMEDHDDLELQGIVSRIRKDLIEFGENYAKITQGDDTSLAICKAVEEFGKMATSKDIDYYNGTSWCRFELYDADFGWGKPTWLSTVFTIELKNLMCL IDTRDGDGIEACISLSPEDMALFESNRELLEFAAANHSVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056400 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	1.00	0.9900
AT5G61820			unknown protein		Potri.015G108800 [exp]	2.82	0.9460
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	6.24	0.9489
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	7.21	0.9493
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119600 [exp]	7.74	0.9283
AT2G01340		At17.1	unknown protein		Potri.010G113800 [exp]	9.79	0.9306
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	12.44	0.9481
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	16.30	0.9464
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	16.91	0.9431
AT5G44550			Uncharacterised protein family...		Potri.001G442300 [exp]	17.88	0.9450

Compare expression of checked genes

Potri.010G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.