Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27880 935 / 0 DEAD/DEAH box RNA helicase family protein (.1) AT4G35740 201 / 4e-54 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G10930 198 / 4e-52 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 196 / 3e-51 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G31360 192 / 4e-51 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 184 / 5e-49 RECQI1 RECQ helicase l1 (.1) AT5G27680 103 / 2e-22 RECQSIM RECQ helicase SIM (.1) AT5G63120 78 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 74 / 2e-13 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 71 / 2e-12 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G107400 [exp] 211 / 3e-57 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G104300 [exp] 192 / 2e-51 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 190 / 2e-49 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G019800 [exp] 184 / 6e-49 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.013G161200 [exp] 173 / 3e-44 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G026400 [exp] 104 / 1e-22 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.012G084600 [exp] 82 / 6e-16 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 76 / 5e-14 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G047301 [exp] 70 / 4e-12 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015818 [exp] 523 / 2e-175 AT1G27880 434 / 2e-141 DEAD/DEAH box RNA helicase family protein (.1) Lus10036983 [exp] 409 / 4e-130 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1) Lus10026219 [exp] 191 / 4e-51 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 188 / 2e-50 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10015467 [exp] 186 / 5e-48 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 182 / 2e-47 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 179 / 2e-46 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034749 [exp] 169 / 3e-43 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034434 [exp] 157 / 5e-39 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 147 / 2e-36 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G056500.1 pacid=42800226 polypeptide=Potri.010G056500.1.p locus=Potri.010G056500 ID=Potri.010G056500.1.v4.1 annot-version=v4.1 ATGGAATCCGATTCAGACTCCGACAGCTCCCACATCTCTTCTACTCCTCCCAGAAACCCCATGCCGCCGCCGCCTCCGCCGCCGCCGCCGCGGCGACCAA CTCTGCTCTCCTCTCACAAATCCAAAATTAGGCTAAAATCCTCCTCCTCTAGCTCAAAATCTCAAAGAAAACTACCATCTGAACCAGCCGAACCGCCTCC ACAACCTTCTCTAGACGACACTTCACTCAACCTCCCCCCACTCTCGACTCTACCTTTCCAGATCCGTTGCTCCTCCAATCTTCACCGCCCAAATCTGATC GAAACCCTCCCCGCCGGCTACTTCTCAAAATCTACATTCTTTTCCAAAATCCAAAGGCCTTCCCTAAACTTCGAGCCGTCGGAAAGCTTTACTTGCCCGC CGGTTTCCGCTGATCGGGCTCCACCGGAAAACAAACCGAATAATTTCATTAAGAAGCATCCTAATTTAATAGGAGCTAATGCGCCTTTACCACCTGCGAA ATTGCGTAAATGCAGTGAAGGTAATTTTGTGAAGCTAAATTTGAATCACGGTAGAAGGAAGTTTGTGAACCGAAAAGGGAAAAAGAAAAGCAGTTATGCG TCGAGCAGCAGGGGATTTTATAGGAGAAGTAAGCGAAAATCGAAAGGTGAAGGTGATGTGGAGATGGAGAGCGTGTGCGACGAGGAAGGTTTGGTCACGG AAATTGGGCAGCAGAAGCCGAAGAAGGGGTGTGAGTTAATTGATGAGGCGGTTTTGGAGGTGCAAAATGAGGCATCGGATGAGAATTTAGCGAGGTTGCT GAACGTGATGTATGGATATGATTCATTTAGAGAAGGGCAGCTGGAGGCAATCAAGATGGTGCTAGATGGAAAATCGACTATGCTTGTTTTGCCTACTGGT GCTGGTAAATCACTGTGTTATCAGATACCAGCAACGGTTTTCTCAGGAGTTACACTTGTGGTGAGCCCTTTAGTGGCATTGATGATTGATCAGTTGAAAC AGCTGCCTCCTGTGATTCAAGGTGGACTTTTGTGCAGCAGTCAGACACCCCAAGAAGTTAGTGAGACACTAAGGTTGCTGCAAGAAGGGGGCATAAAGGT GCTTTTTGTTTCACCAGAGAGGTTCTTAAATGCGGAATTCTTGTCGATTCTCTCACCTATTCCCATTTCACTTCTTGTGGTAGATGAAGCTCACTGTATT TCCGAATGGTCACACAACTTCCGGCCTTCATATATGAGGCTCCGTGCATCTTTACTTTGCACCAGGCTCAATATTGGATGCATTCTTGCAATGACTGCAA CTGCTACTACAACAACTTTGAATGCTATCATGTCTGCTCTAGAGATTCCTTCCACCAACCTCATTCAAAATGCCAAGTTGAGGGATAATATGCAATTGTC AGTATCTTTGAGTGGAAATAGAACGAAAGATTTGCTGACATTAATTAAGTCTCCTCCCTTCGTAGAACTTCAAAGCATCATTATATACTGCAAATTTCAG TCTGAAACTGATATAATAAGCAGATACTTATGCGATAACAACATCTCAGCAAAGAGTTACCATAGCTCTATCACTTCAAAAGATCGCAGCCGTATACAAG AACTGTTTTGTTCAAACAAGATTAGAGTGGTTGTTGCAACTGTGGCTTTTGGCATGGGTCTTGACAAGAGGGATGTTGGAGCCGTAATTCATTATAGTAT GCCAGAAAGCTTGGAAGAGTATGTTCAGGAGATTGGACGTGCTGGACGAGATGGGAGATTGTCCCATTGCCATCTCTTTTTTGATGATACCACCTATTTC AAGCTTCGAAGTCTTATGCACAGTGAAGGAGTAGATGAATATGCAGTAAACAAGTTCCTCTGCGAAATATTTTCCACTGACATGAAGCACCCGGGGAAAA TCCATGCAATAATCAAAGAATCTTCATCTCGCAAATTTGATATGAAAGAAGAGGTTATGCTCACACTCTTAACACAGTTGGAGTTGGGTGAAGTGCAATA CATTCATCTACTTCCACAGCTAAATGTTACTTGCACTTTGAATTTCTACAAGACTTCTCCAATGTTGCTTTCTGACAAGGATAATGTGGTTTCAGCAATT CTTAAAAAGTCTGAAACTAAGCAAGGTCAATATGTATTTGACATACCTACCGTGGCAAATAGCATCGGGGTTACAACTACTGAGCTATCAAATCATCTAC AGAATTTAAAGTTGAAGGGCGAAATAACATATGACGTCAAGGATCCTGCCTATTGTTATTCAATCGTGGAAGTCCCAAGGGATTTTTGTTCTCTCTCAAG GCATCTTACAAAATGGTTATTGGAGGTCGAATGTTTTAAGGTACAAAAACTAGATGCAATGTTTAACGCAGCAATCTTTGCTGTGAATGATTGCGAGAAG ATGCAAGGCTGCCATGGTACCCAGCACACACCATGTTTGCAAAGAAAGATCTTGGATTACTTCAAGGATGATGGTAGACGTGATATCCCTAACAAGATGG GACAAAGCAGCCCTTTTTTACGAGCAGATATAAAGGTGTTTCTGCAGGGCAATTCACAGGCCAAATTTACCCCCCGAGCCATTGCAAGAATAATGCATGG CATTGCTAGCCCAGCCTATCCATCTGCAACTTGGTCTAGAACTCATTTCTGGGGAAGGTATACGCAGATTGACTTCCAAGTGGTCATGGAAGCTGCGAAG GTGGAACTCATGAATTTTGTTGGGAAGGATGCCCTCTAG
AA sequence Show only first row Show all	>Potri.010G056500.1 pacid=42800226 polypeptide=Potri.010G056500.1.p locus=Potri.010G056500 ID=Potri.010G056500.1.v4.1 annot-version=v4.1 MESDSDSDSSHISSTPPRNPMPPPPPPPPPRRPTLLSSHKSKIRLKSSSSSSKSQRKLPSEPAEPPPQPSLDDTSLNLPPLSTLPFQIRCSSNLHRPNLI ETLPAGYFSKSTFFSKIQRPSLNFEPSESFTCPPVSADRAPPENKPNNFIKKHPNLIGANAPLPPAKLRKCSEGNFVKLNLNHGRRKFVNRKGKKKSSYA SSSRGFYRRSKRKSKGEGDVEMESVCDEEGLVTEIGQQKPKKGCELIDEAVLEVQNEASDENLARLLNVMYGYDSFREGQLEAIKMVLDGKSTMLVLPTG AGKSLCYQIPATVFSGVTLVVSPLVALMIDQLKQLPPVIQGGLLCSSQTPQEVSETLRLLQEGGIKVLFVSPERFLNAEFLSILSPIPISLLVVDEAHCI SEWSHNFRPSYMRLRASLLCTRLNIGCILAMTATATTTTLNAIMSALEIPSTNLIQNAKLRDNMQLSVSLSGNRTKDLLTLIKSPPFVELQSIIIYCKFQ SETDIISRYLCDNNISAKSYHSSITSKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSMPESLEEYVQEIGRAGRDGRLSHCHLFFDDTTYF KLRSLMHSEGVDEYAVNKFLCEIFSTDMKHPGKIHAIIKESSSRKFDMKEEVMLTLLTQLELGEVQYIHLLPQLNVTCTLNFYKTSPMLLSDKDNVVSAI LKKSETKQGQYVFDIPTVANSIGVTTTELSNHLQNLKLKGEITYDVKDPAYCYSIVEVPRDFCSLSRHLTKWLLEVECFKVQKLDAMFNAAIFAVNDCEK MQGCHGTQHTPCLQRKILDYFKDDGRRDIPNKMGQSSPFLRADIKVFLQGNSQAKFTPRAIARIMHGIASPAYPSATWSRTHFWGRYTQIDFQVVMEAAK VELMNFVGKDAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	3.00	0.9321
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	5.29	0.9216
AT2G37960			unknown protein		Potri.006G094600 [exp]	6.00	0.9213
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	6.32	0.9055	CPE902,Pt-SMC2.2
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	8.48	0.9009
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	9.16	0.9166
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	11.13	0.8719
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	12.40	0.9090
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	12.48	0.9092
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	12.64	0.8320

Compare expression of checked genes

Potri.010G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.