Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67590 253 / 8e-82 Remorin family protein (.1.2) AT2G02170 108 / 6e-26 Remorin family protein (.1.2) AT1G30320 106 / 5e-25 Remorin family protein (.1) AT1G53860 65 / 2e-11 Remorin family protein (.1) AT2G41870 50 / 6e-07 Remorin family protein (.1) AT3G57540 48 / 4e-06 Remorin family protein (.1) AT3G61260 43 / 0.0001 Remorin family protein (.1) AT2G45820 42 / 0.0002 Remorin family protein (.1) AT3G48940 41 / 0.0003 Remorin family protein (.1) AT5G23750 40 / 0.001 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178300 [exp] 551 / 0 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.008G144300 [exp] 101 / 2e-23 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.001G358600 [exp] 101 / 2e-23 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G098000 [exp] 87 / 2e-18 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.014G027900 [exp] 64 / 9e-11 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.001G163000 [exp] 60 / 1e-09 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.016G054400 [exp] 59 / 2e-09 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 57 / 6e-09 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.002G157700 [exp] 42 / 0.0002 AT3G61260 167 / 2e-52 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015817 [exp] 264 / 2e-85 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10036996 [exp] 112 / 2e-29 AT1G67590 184 / 2e-57 Remorin family protein (.1.2) Lus10038522 [exp] 98 / 2e-23 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10041239 [exp] 94 / 2e-22 AT1G67590 72 / 6e-15 Remorin family protein (.1.2) Lus10026481 [exp] 92 / 3e-22 AT1G67590 63 / 2e-12 Remorin family protein (.1.2) Lus10036997 [exp] 91 / 4e-22 AT1G67590 51 / 1e-08 Remorin family protein (.1.2) Lus10023284 [exp] 94 / 9e-21 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10032549 [exp] 66 / 1e-11 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10026302 [exp] 59 / 7e-10 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10005708 [exp] 51 / 8e-07 AT1G45207 454 / 2e-154 Remorin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.010G056800.6 pacid=42798278 polypeptide=Potri.010G056800.6.p locus=Potri.010G056800 ID=Potri.010G056800.6.v4.1 annot-version=v4.1 ATGAGATCTATGGAGGATAAAGGGTGTTACAATCATGGACCAACTCAGGAGATTCCAAGTAGTAAGGCAACTAGCTTTGAGTTTCATAAAGGCAATGGAG CTAGTCGCGGTGGTCATCACCGAACAGCTTTAGGCAAACCAACACCATCCAAATGGGATGATGCACAAAAATGGTTAGTGGGATTGTCAAGAGGAGGGGG AGGAGATAGAAAAGAAAGCCAGCCACGAAACTCAAATGCCGACGATAGGAGACTTATAGCTCCAGTTCCTCAAATGGAACATGACTATTCAAGTGGAGAA GATGAAGTTGGAGGAGAAGCAGCAAATGGGTGTTCTATTTCAATCACAAATCAGTATGAAGTAGAAACAAAGAAGGTAGACTGTGATGAGTCAGTGTGGA GAGTTAATAAGCCTGCACAGAACTCAACAATGAGTGCTGTTAGATCAATCTGTGTTAGGGACATGGGGACTGAGATGACCCCCATTGCTAGCCAAGAGCC TTCAAGAACAACAACACCGATTAGAGCTACTACACCGGCGGCGAGGAGCCCTGTATCTTCAGGATCTTGCACCCCAGTGAGGGGCCTGAACGGGTTGCCG GGCAATGAAGGCTATCAAACAGGTTTAGCAATGACTGAAAGTAGAGGTGAGGCCAGTTGTGCTCCCAGAGGGGTTAGTGCAACAAGAAATTACTATGGAC AAGAATCCAATGGTTCTAGGATACACGAGAATATGGAATCGGATCAAGTAAGAAAGGTGAGTACTCTAGAAACAAGAGCAATGGCTTGGGATGATGCAGA GCGAGCCAAATACATGGCGAGGTATAAGCGTGAAGAGGTGAAGATCCAAGCCTGGGAAAATCATGAGAAGAGAAAAGCAGAAATGGAAAAGAGGAAAATG GAGGTGAAGGCTGAGAGGCTGAAAGCTCGAGCACAAGAACGGTTGGCAAACAAACTGGCCTCGACTACGAGAATAGCTGAAGAGAAGCGTTCAAATGCGG AGGCCACACTGAATGAGAAAGCCGTGAAGACTTCTGAAACGGCAGATTATATAAGGAGGACCGGGCACTTGCCCTCTTCATTCTCCTTCAAGTTTCCTTC CCTGTGCTGGTAG
AA sequence Show only first row Show all	>Potri.010G056800.6 pacid=42798278 polypeptide=Potri.010G056800.6.p locus=Potri.010G056800 ID=Potri.010G056800.6.v4.1 annot-version=v4.1 MRSMEDKGCYNHGPTQEIPSSKATSFEFHKGNGASRGGHHRTALGKPTPSKWDDAQKWLVGLSRGGGGDRKESQPRNSNADDRRLIAPVPQMEHDYSSGE DEVGGEAANGCSISITNQYEVETKKVDCDESVWRVNKPAQNSTMSAVRSICVRDMGTEMTPIASQEPSRTTTPIRATTPAARSPVSSGSCTPVRGLNGLP GNEGYQTGLAMTESRGEASCAPRGVSATRNYYGQESNGSRIHENMESDQVRKVSTLETRAMAWDDAERAKYMARYKREEVKIQAWENHEKRKAEMEKRKM EVKAERLKARAQERLANKLASTTRIAEEKRSNAEATLNEKAVKTSETADYIRRTGHLPSSFSFKFPSLCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	0	1
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	2.00	0.8630
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	2.44	0.8812
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	4.89	0.8275	SKS1.3
AT2G07170			ARM repeat superfamily protein...		Potri.006G079500 [exp]	5.29	0.8600
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	5.47	0.8497
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Potri.004G222400 [exp]	7.07	0.8292
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066500 [exp]	8.12	0.8470
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	8.94	0.8419
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	9.48	0.8199
AT4G23740			Leucine-rich repeat protein ki...		Potri.015G023500 [exp]	11.83	0.7716

Compare expression of checked genes

Potri.010G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.